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Research
:
Transcriptome-wide systematic search does not detect A-to-I RNA editing in
cis
-antisense RNA duplexes
Zohar Rosenwasser
,
Roni Cohen-Fultheim
,
Ofir Shliefer
,
Erez Y. Levanon
,
and
Eli Eisenberg
Genome Res.
March 12, 2026
gr.280820.125
;
Published in Advance
March 12, 2026
,
doi:
10.1101/gr.280820.125
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Method
:
Scalable cell-specific coexpression networks for granular regulatory pattern discovery with NeighbourNet
Yidi Deng
,
Jiadong Mao
,
Jarny Choi
,
and
Kim-Anh Le Cao
Genome Res.
March 5, 2026
gr.281171.125
;
Published in Advance
March 5, 2026
,
doi:
10.1101/gr.281171.125
Abstract
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Method
:
Automated interpretable artificial intelligence genomic prediction with AIGP
Lei Wei
,
Ziqin Jiang
,
Baoliang Fan
,
Yidan Yan
,
Zhenqiang Xu
,
Xiaoxiang Hu
,
and
Yuzhe Wang
Genome Res.
March 5, 2026
gr.281006.125
;
Published in Advance
March 5, 2026
,
doi:
10.1101/gr.281006.125
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Method
:
Minimizing reference bias with an imputed personalized reference
Kavya Vaddadi
,
Mao-Jan Lin
,
Sina Majidian
,
Taher Mun
,
and
Ben Langmead
Genome Res.
March 5, 2026
gr.280989.125
;
Published in Advance
March 5, 2026
,
doi:
10.1101/gr.280989.125
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Research
:
Functional genomics analysis of developing zebrafish and human endoderm reveals highly conserved
cis
-regulatory modules acting during vertebrate organogenesis
Daniela M Riley
,
Randa Elsayed
,
Mark D Walsh
,
Simaran Johal
,
Ying Lin
,
Harry Walton
,
Till Bretschneider
,
Sascha Ott
,
and
Andrew C Nelson
Genome Res.
March 4, 2026
gr.280838.125
;
Published in Advance
March 4, 2026
,
doi:
10.1101/gr.280838.125
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Resource
:
Single-nucleus multiomic profiling of the aging mouse substantia nigra reveals conserved gene alterations linked to Parkinson's disease
Kangli Wang
,
Weikun Xia
,
Yingli Gu
,
Songpeng Zu
,
Qian Yang
,
Maria Luisa Amaral
,
Yaozhi Wang
,
Allen Wang
,
Xiang-Dong Fu
,
William C. Mobley
,
and
Bing Ren
Genome Res.
March 4, 2026
gr.281113.125
;
Published in Advance
March 4, 2026
,
doi:
10.1101/gr.281113.125
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Research
:
Dynamic A-to-I RNA editing in response to gut microbiome in honey bees
Yuange Duan
,
Min Huang
,
Lin Ye
,
Ling Ma
,
Yashuai Wu
,
Yating Du
,
Jiyao Liu
,
Fan Song
,
Li Tian
,
Wanzhi Cai
,
Hu Li
,
Xin Zhou
,
and
Shiqi Luo
Genome Res.
March 4, 2026
gr.280291.124
;
Published in Advance
March 4, 2026
,
doi:
10.1101/gr.280291.124
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Research
:
Confounding factors in assessing the enriched expression of somatic mutant allele in bulk tumor samples
Kohei Hagiwara
,
Andrew Thrasher
,
Nadezhda V Terekhanova
,
and
Jinghui Zhang
Genome Res.
March 4, 2026
gr.281003.125
;
Published in Advance
March 4, 2026
,
doi:
10.1101/gr.281003.125
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Erratum
:
Erratum: Expanded methylome and quantitative trait loci detection by long-read profiling of personal DNA
Cristian Groza
,
Bing Ge
,
Warren A. Cheung
,
Tomi Pastinen
,
and
Guillaume Bourque
Genome Res.
March 2026
36
:
660
;
doi:
10.1101/gr.281963.126
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Review
:
A systematic guide for identifying transcription factors that directly regulate the expression of a gene of interest
Andrew D. Bates
,
Dawid Grzela
,
Maciej Studzian
,
Louise Brennan
,
Moli Williams
,
Conor Fawcett
,
Beth Hammond
,
Manreen Grewal
,
Marcin Ratajewski
,
Lukasz Pulaski
,
and
Urszula L. McClurg
Genome Res.
March 2026
36
:
433
-
459
;
Published in Advance
February 17, 2026
,
doi:
10.1101/gr.281154.125
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March 2026, 36 (3)
In This Issue
Single-cell gene signature scoring
Chromosome engineering in 8p syndrome
Convergent evolution in arid rodents
Short tandem repeat genotyping using long reads
Spectral component approach for recent population structure
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