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  1. Resource: Single-nucleus multiomic profiling of the aging mouse substantia nigra reveals conserved gene alterations linked to Parkinson's disease
    • Kangli Wang,
    • Weikun Xia,
    • Yingli Gu,
    • Songpeng Zu,
    • Qian Yang,
    • Maria Luisa Amaral,
    • Yaozhi Wang,
    • Allen Wang,
    • Xiang-Dong Fu,
    • William C. Mobley,
    • and Bing Ren
    Genome Res. March 4, 2026 gr.281113.125; Published in Advance March 4, 2026, doi:10.1101/gr.281113.125
    OPEN ACCESS ARTICLEACCEPTED MANUSCRIPT
  2. Resource: Cell type–specific gene regulatory atlas prioritizes drug targets and repurposable medicines in Alzheimer's disease
    • Yunxiao Ren,
    • Ming Hu,
    • Yang E. Li,
    • Andrew A. Pieper,
    • Jeffrey Cummings,
    • and Feixiong Cheng
    Genome Res. March 2026 36: 645-659; Published in Advance January 21, 2026, doi:10.1101/gr.280436.125
    OPEN ACCESS ARTICLE
  3. Resource: The SynMall resource for characterizing the functional impact of synonymous variation
    • Chen Ye,
    • Xiaoyan Li,
    • Na Cheng,
    • Yansen Su,
    • and Junfeng Xia
    Genome Res. February 2026 36: 421-431; Published in Advance December 17, 2025, doi:10.1101/gr.281257.125
  4. Resource: A systems view on DNA damage response kinetics in Tetrahymena
    • Emily Nischwitz,
    • Vivien Schoonenberg,
    • Rachel Mullner,
    • Albert Fradera-Sola,
    • Susanne Zimbelmann,
    • Joshua J Smith,
    • and Falk Butter
    Genome Res. January 28, 2026 gr.281000.125; Published in Advance January 28, 2026, doi:10.1101/gr.281000.125
    ACCEPTED MANUSCRIPT
  5. Resource: The PanOryza pangene catalog of Asian cultivated rice
    • Bruno Contreras-Moreira,
    • Eshan Sharma,
    • Shradha Saraf,
    • Guy Naamati,
    • Parul Gupta,
    • Justin Elser,
    • Dmytro Chebotarov,
    • Kapeel Chougule,
    • Zhenyuan Lu,
    • Sharon Wei,
    • Andrew Olson,
    • Ian Tsang,
    • Disha Lodha,
    • Yong Zhou,
    • Zhichao Yu,
    • Wen Zhao,
    • Jianwei Zhang,
    • Sandeep Amberkar,
    • Kawinnat Sue-Ob,
    • Zhi Sun,
    • Maria Martin,
    • Kenneth L. McNally,
    • Doreen Ware,
    • Eric W. Deutsch,
    • Dario Copetti,
    • Rod A. Wing,
    • Pankaj Jaiswal,
    • Sarah Dyer,
    • and Andrew R. Jones
    Genome Res. January 2026 36: 226-238; Published in Advance December 12, 2025, doi:10.1101/gr.280790.125
    OPEN ACCESS ARTICLE
  6. Resource: Epigenomics of embryogenesis in turbot
    • Oscar Aramburu,
    • Belen G Pardo,
    • Ada Jimenez-Gonzalez,
    • Andrés Blanco-Hortas,
    • Daniel Macqueen,
    • Carmen Bouza,
    • and Paulino Martinez
    Genome Res. November 4, 2025 gr.280355.124; Published in Advance November 4, 2025, doi:10.1101/gr.280355.124
    OPEN ACCESS ARTICLEACCEPTED MANUSCRIPT
  7. Resource: Quadrupia provides a comprehensive catalog of G-quadruplexes across genomes from the tree of life
    • Nikol Chantzi,
    • Akshatha Nayak,
    • Fotis A. Baltoumas,
    • Eleni Aplakidou,
    • Shiau Wei Liew,
    • Jesslyn Elvaretta Galuh,
    • Michail Patsakis,
    • Austin Montgomery,
    • Camille Moeckel,
    • Ioannis Mouratidis,
    • Saiful Arefeen Sazed,
    • Wilfried Guiblet,
    • Panagiotis Karmiris-Obratański,
    • Guliang Wang,
    • Apostolos Zaravinos,
    • Karen M. Vasquez,
    • Chun Kit Kwok,
    • Georgios A. Pavlopoulos,
    • and Ilias Georgakopoulos-Soares
    Genome Res. November 2025 35: 2578-2600; Published in Advance August 26, 2025, doi:10.1101/gr.279790.124
    OPEN ACCESS ARTICLE
  8. Resource: High-quality assembly of the Chinese white truffle genome and recalibrated divergence time estimate provide insight into the evolutionary dynamics of Tuberaceae
    • Jacopo Martelossi,
    • Jacopo Vujovic,
    • Yue Huang,
    • Alessia Tatti,
    • Kaiwei Xu,
    • Federico Puliga,
    • Yuanxue Chen,
    • Omar Rota Stabelli,
    • Fabrizio Ghiselli,
    • Xiaoping Zhang,
    • and Alessandra Zambonelli
    Genome Res. November 2025 35: 2601-2616; Published in Advance August 21, 2025, doi:10.1101/gr.280368.124
  9. Resource: Integrative chromatin state annotation of 234 human ENCODE4 cell types using Segway
    • Marjan Farahbod,
    • Aboud Diab,
    • Paul Sud,
    • Meenakshi S. Kagda,
    • Ian Whaling,
    • Mehdi Foroozandeh,
    • Ishan Goel,
    • Habib Daneshpajouh,
    • Benjamin Hitz,
    • J. Michael Cherry,
    • and Maxwell W. Libbrecht
    Genome Res. October 6, 2025 gr.280633.125; Published in Advance October 6, 2025, doi:10.1101/gr.280633.125
    OPEN ACCESS ARTICLEACCEPTED MANUSCRIPT
  10. Resource: Analyzing the large and complex SFARI autism cohort data using the Genotypes and Phenotypes in Families (GPF) platform
    • Liubomir Chorbadjiev,
    • Murat Cokol,
    • Zohar Weinstein,
    • Kevin Shi,
    • Christopher Fleisch,
    • Nikolay Dimitrov,
    • Svetlin Mladenov,
    • Ivo Todorov,
    • Iordan Ivanov,
    • Simon Xu,
    • Steven Ford,
    • Yoon-ha Lee,
    • Boris Yamrom,
    • Steven Marks,
    • Adriana Munoz,
    • Alex Lash,
    • Natalia Volfovsky,
    • and Ivan Iossifov
    Genome Res. October 2025 35: 2352-2362; Published in Advance September 16, 2025, doi:10.1101/gr.280356.124
    OPEN ACCESS ARTICLE
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