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Method
:
Scalable cell-specific coexpression networks for granular regulatory pattern discovery with NeighbourNet
Yidi Deng
,
Jiadong Mao
,
Jarny Choi
,
and
Kim-Anh Le Cao
Genome Res.
March 5, 2026
gr.281171.125
;
Published in Advance
March 5, 2026
,
doi:
10.1101/gr.281171.125
Abstract
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Method
:
Automated interpretable artificial intelligence genomic prediction with AIGP
Lei Wei
,
Ziqin Jiang
,
Baoliang Fan
,
Yidan Yan
,
Zhenqiang Xu
,
Xiaoxiang Hu
,
and
Yuzhe Wang
Genome Res.
March 5, 2026
gr.281006.125
;
Published in Advance
March 5, 2026
,
doi:
10.1101/gr.281006.125
Abstract
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Method
:
Minimizing reference bias with an imputed personalized reference
Kavya Vaddadi
,
Mao-Jan Lin
,
Sina Majidian
,
Taher Mun
,
and
Ben Langmead
Genome Res.
March 5, 2026
gr.280989.125
;
Published in Advance
March 5, 2026
,
doi:
10.1101/gr.280989.125
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Method
:
Gene duplication is associated with gene diversification and potential neofunctionalization in lung cancer evolution
Paul Ashford
,
Alexander M. Frankell
,
Zofia Piszka
,
Camilla S.M. Pang
,
Mahnaz Abbasian
,
Maise Al Bakir
,
Mariam Jamal-Hanjani
,
Nicholas McGranahan
,
Charles Swanton
,
and
Christine A. Orengo
Genome Res.
March 2026
36
:
561
-
577
;
Published in Advance
February 19, 2026
,
doi:
10.1101/gr.278663.123
Abstract
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Method
:
Chromosome engineering to correct a complex rearrangement on Chromosome 8 reveals the effects of 8p syndrome on gene expression and neural differentiation
Sophia N. Lee
,
Erin C. Banda
,
Lu Qiao
,
Sarah L. Thompson
,
Karan Singh
,
Ryan A. Hagenson
,
Teresa Davoli
,
Stefan F. Pinter
,
and
Jason M. Sheltzer
Genome Res.
March 2026
36
:
547
-
560
;
Published in Advance
January 12, 2026
,
doi:
10.1101/gr.280425.125
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Method
:
EnDeep4mC predicts DNA
N
4
-methylcytosine sites using a dual-adaptive feature encoding framework in deep ensembles
Shuyu Zhang
,
Quan Zou
,
Mengting Niu
,
Zhibin Lv
,
Antony Stalin
,
and
Ximei Luo
Genome Res.
March 2026
36
:
589
-
599
;
Published in Advance
February 17, 2026
,
doi:
10.1101/gr.280977.125
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Method
:
Analysis of coding gene expression from small RNA sequencing
Aygun Azadova
,
Anthonia Ekperuoh
,
Greg N. Brooke
,
and
Antonio Marco
Genome Res.
March 2026
36
:
611
-
618
;
Published in Advance
February 10, 2026
,
doi:
10.1101/gr.281364.125
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Method
:
Mapping and quantifying nascent transcript start sites using TT-TSS-seq
Eleanor Elgood Hunt
,
Claudia Vivori
,
Richard Mitter
,
Vedis Agnadottir
,
and
Folkert J. van Werven
Genome Res.
March 2026
36
:
600
-
610
;
Published in Advance
February 17, 2026
,
doi:
10.1101/gr.280726.125
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Method
:
A spectral component approach leveraging identity-by-descent graphs to address recent population structure in genomic analysis
Ruhollah Shemirani
,
Gillian M. Belbin
,
Sinead Cullina
,
Christa Caggiano
,
Christopher R. Gignoux
,
Noah Zaitlen
,
and
Eimear E. Kenny
Genome Res.
March 2026
36
:
534
-
546
;
Published in Advance
December 23, 2025
,
doi:
10.1101/gr.280659.125
Abstract
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Method
:
Read-level genotyping of short tandem repeats using long reads and single-nucleotide variation with STRkit
David R. Lougheed
,
Tomi Pastinen
,
and
Guillaume Bourque
Genome Res.
March 2026
36
:
578
-
588
;
Published in Advance
January 15, 2026
,
doi:
10.1101/gr.280766.125
Abstract
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Current Issue
March 2026, 36 (3)
In This Issue
Single-cell gene signature scoring
Chromosome engineering in 8p syndrome
Convergent evolution in arid rodents
Short tandem repeat genotyping using long reads
Spectral component approach for recent population structure
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