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  1. LETTER: The mitochondrial genome sequence of the Tasmanian tiger (Thylacinus cynocephalus)
    • Webb Miller,
    • Daniela I. Drautz,
    • Jan E. Janecka,
    • Arthur M. Lesk,
    • Aakrosh Ratan,
    • Lynn P. Tomsho,
    • Mike Packard,
    • Yeting Zhang,
    • Lindsay R. McClellan,
    • Ji Qi,
    • Fangqing Zhao,
    • M. Thomas P. Gilbert,
    • Love Dalén,
    • Juan Luis Arsuaga,
    • Per G.P. Ericson,
    • Daniel H. Huson,
    • Kristofer M. Helgen,
    • William J. Murphy,
    • Anders Götherström,
    • and Stephan C. Schuster
    Genome Res. February 2009 19: 213-220; Published in Advance January 12, 2009, doi:10.1101/gr.082628.108
    OPEN ACCESS ARTICLE
  2. LETTER: A sequence-level map of chromosomal breakpoints in the MCF-7 breast cancer cell line yields insights into the evolution of a cancer genome
    • Oliver A. Hampton,
    • Petra Den Hollander,
    • Christopher A. Miller,
    • David A. Delgado,
    • Jian Li,
    • Cristian Coarfa,
    • Ronald A. Harris,
    • Stephen Richards,
    • Steven E. Scherer,
    • Donna M. Muzny,
    • Richard A. Gibbs,
    • Adrian V. Lee,
    • and Aleksandar Milosavljevic
    Genome Res. February 2009 19: 167-177; Published in Advance December 3, 2008, doi:10.1101/gr.080259.108
    OPEN ACCESS ARTICLE
  3. LETTER: Sequencing human–gibbon breakpoints of synteny reveals mosaic new insertions at rearrangement sites
    • Santhosh Girirajan,
    • Lin Chen,
    • Tina Graves,
    • Tomas Marques-Bonet,
    • Mario Ventura,
    • Catrina Fronick,
    • Lucinda Fulton,
    • Mariano Rocchi,
    • Robert S. Fulton,
    • Richard K. Wilson,
    • Elaine R. Mardis,
    • and Evan E. Eichler
    Genome Res. February 2009 19: 178-190; Published in Advance November 24, 2008, doi:10.1101/gr.086041.108
  4. LETTER: Widespread balancing selection and pathogen-driven selection at blood group antigen genes
    • Matteo Fumagalli,
    • Rachele Cagliani,
    • Uberto Pozzoli,
    • Stefania Riva,
    • Giacomo P. Comi,
    • Giorgia Menozzi,
    • Nereo Bresolin,
    • and Manuela Sironi
    Genome Res. February 2009 19: 199-212; Published in Advance November 7, 2008, doi:10.1101/gr.082768.108
  5. LETTER: H3K27me3 forms BLOCs over silent genes and intergenic regions and specifies a histone banding pattern on a mouse autosomal chromosome
    • Florian M. Pauler,
    • Mathew A. Sloane,
    • Ru Huang,
    • Kakkad Regha,
    • Martha V. Koerner,
    • Ido Tamir,
    • Andreas Sommer,
    • Andras Aszodi,
    • Thomas Jenuwein,
    • and Denise P. Barlow
    Genome Res. February 2009 19: 221-233; Published in Advance December 1, 2008, doi:10.1101/gr.080861.108
  6. LETTER: Network-level molecular evolutionary analysis of the insulin/TOR signal transduction pathway across 12 Drosophila genomes
    • David Alvarez-Ponce,
    • Montserrat Aguadé,
    • and Julio Rozas
    Genome Res. February 2009 19: 234-242; Published in Advance January 13, 2009, doi:10.1101/gr.084038.108
  7. LETTER: Natural selection on gene function drives the evolution of LTR retrotransposon families in the rice genome
    • Regina S. Baucom,
    • James C. Estill,
    • Jim Leebens-Mack,
    • and Jeffrey L. Bennetzen
    Genome Res. February 2009 19: 243-254; Published in Advance November 24, 2008, doi:10.1101/gr.083360.108
  8. LETTER: Identification of miniature inverted-repeat transposable elements (MITEs) and biogenesis of their siRNAs in the Solanaceae: New functional implications for MITEs
    • Hanhui Kuang,
    • Chellappan Padmanabhan,
    • Feng Li,
    • Ayako Kamei,
    • Pudota B. Bhaskar,
    • Shu Ouyang,
    • Jiming Jiang,
    • C. Robin Buell,
    • and Barbara Baker
    Genome Res. January 2009 19: 42-56; Published in Advance November 26, 2008, doi:10.1101/gr.078196.108
  9. LETTER: Global analysis of the insulator binding protein CTCF in chromatin barrier regions reveals demarcation of active and repressive domains
    • Suresh Cuddapah,
    • Raja Jothi,
    • Dustin E. Schones,
    • Tae-Young Roh,
    • Kairong Cui,
    • and Keji Zhao
    Genome Res. January 2009 19: 24-32; Published in Advance December 3, 2008, doi:10.1101/gr.082800.108
    OPEN ACCESS ARTICLE
  10. LETTER: Comparative sequence analysis of primate subtelomeres originating from a chromosome fission event
    • M. Katharine Rudd,
    • RaeLynn M. Endicott,
    • Cynthia Friedman,
    • Megan Walker,
    • Janet M. Young,
    • Kazutoyo Osoegawa,
    • NISC Comparative Sequencing Program,
    • Pieter J. de Jong,
    • Eric D. Green,
    • and Barbara J. Trask
    Genome Res. January 2009 19: 33-41; Published in Advance October 24, 2008, doi:10.1101/gr.083170.108
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