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Article
:
Genome-wide dynamics of replication timing revealed by in vitro models of mouse embryogenesis
Ichiro Hiratani
,
Tyrone Ryba
,
Mari Itoh
,
Joy Rathjen
,
Michael Kulik
,
Bernadett Papp
,
Eden Fussner
,
David P. Bazett-Jones
,
Kathrin Plath
,
Stephen Dalton
,
Peter D. Rathjen
,
and
David M. Gilbert
Genome Res.
February 2010
20
:
155
-
169
;
Published in Advance
December 1, 2009
,
doi:
10.1101/gr.099796.109
Abstract
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Article
:
Genomic determination of the glucocorticoid response reveals unexpected mechanisms of gene regulation
Timothy E. Reddy
,
Florencia Pauli
,
Rebekka O. Sprouse
,
Norma F. Neff
,
Kimberly M. Newberry
,
Michael J. Garabedian
,
and
Richard M. Myers
Genome Res.
December 2009
19
:
2163
-
2171
;
Published in Advance
October 2, 2009
,
doi:
10.1101/gr.097022.109
Abstract
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Article
:
Erythroid GATA1 function revealed by genome-wide analysis of transcription factor occupancy, histone modifications, and mRNA expression
Yong Cheng
,
Weisheng Wu
,
Swathi Ashok Kumar
,
Duonan Yu
,
Wulan Deng
,
Tamara Tripic
,
David C. King
,
Kuan-Bei Chen
,
Ying Zhang
,
Daniela Drautz
,
Belinda Giardine
,
Stephan C. Schuster
,
Webb Miller
,
Francesca Chiaromonte
,
Yu Zhang
,
Gerd A. Blobel
,
Mitchell J. Weiss
,
and
Ross C. Hardison
Genome Res.
December 2009
19
:
2172
-
2184
;
Published in Advance
November 3, 2009
,
doi:
10.1101/gr.098921.109
Abstract
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Article
:
Comparative genomics of protoploid
Saccharomycetaceae
The Génolevures Consortium
,
Jean-Luc Souciet
,
Bernard Dujon
,
Claude Gaillardin
,
Mark Johnston
,
Philippe V. Baret
,
Paul Cliften
,
David J. Sherman
,
Jean Weissenbach
,
Eric Westhof
,
Patrick Wincker
,
Claire Jubin
,
Julie Poulain
,
Valérie Barbe
,
Béatrice Ségurens
,
François Artiguenave
,
Véronique Anthouard
,
Benoit Vacherie
,
Marie-Eve Val
,
Robert S. Fulton
,
Patrick Minx
,
Richard Wilson
,
Pascal Durrens
,
Géraldine Jean
,
Christian Marck
,
Tiphaine Martin
,
Macha Nikolski
,
Thomas Rolland
,
Marie-Line Seret
,
Serge Casarégola
,
Laurence Despons
,
Cécile Fairhead
,
Gilles Fischer
,
Ingrid Lafontaine
,
Véronique Leh
,
Marc Lemaire
,
Jacky de Montigny
,
Cécile Neuvéglise
,
Agnès Thierry
,
Isabelle Blanc-Lenfle
,
Claudine Bleykasten
,
Julie Diffels
,
Emilie Fritsch
,
Lionel Frangeul
,
Adrien Goëffon
,
Nicolas Jauniaux
,
Rym Kachouri-Lafond
,
Célia Payen
,
Serge Potier
,
Lenka Pribylova
,
Christophe Ozanne
,
Guy-Franck Richard
,
Christine Sacerdot
,
Marie-Laure Straub
,
and
Emmanuel Talla
Genome Res.
October 2009
19
:
1696
-
1709
;
Published in Advance
June 12, 2009
,
doi:
10.1101/gr.091546.109
Abstract
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Article
:
Meiotic recombination generates rich diversity in NK cell receptor genes, alleles, and haplotypes
Paul J. Norman
,
Laurent Abi-Rached
,
Ketevan Gendzekhadze
,
John A. Hammond
,
Achim K. Moesta
,
Deepti Sharma
,
Thorsten Graef
,
Karina L. McQueen
,
Lisbeth A. Guethlein
,
Christine V.F. Carrington
,
Dasdayanee Chandanayingyong
,
Yih-Hsin Chang
,
Catalina Crespí
,
Güher Saruhan-Direskeneli
,
Kamran Hameed
,
Giorgi Kamkamidze
,
Kwadwo A. Koram
,
Zulay Layrisse
,
Nuria Matamoros
,
Joan Milà
,
Myoung Hee Park
,
Ramasamy M. Pitchappan
,
D. Dan Ramdath
,
Ming-Yuh Shiau
,
Henry A.F. Stephens
,
Siske Struik
,
Dolly Tyan
,
David H. Verity
,
Robert W. Vaughan
,
Ronald W. Davis
,
Patricia A. Fraser
,
Eleanor M. Riley
,
Mostafa Ronaghi
,
and
Peter Parham
Genome Res.
May 2009
19
:
757
-
769
;
doi:
10.1101/gr.085738.108
Abstract
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Article
:
High-resolution DNA-binding specificity analysis of yeast transcription factors
Cong Zhu
,
Kelsey J.R.P. Byers
,
Rachel Patton McCord
,
Zhenwei Shi
,
Michael F. Berger
,
Daniel E. Newburger
,
Katrina Saulrieta
,
Zachary Smith
,
Mita V. Shah
,
Mathangi Radhakrishnan
,
Anthony A. Philippakis
,
Yanhui Hu
,
Federico De Masi
,
Marcin Pacek
,
Andreas Rolfs
,
Tal Murthy
,
Joshua LaBaer
,
and
Martha L. Bulyk
Genome Res.
April 2009
19
:
556
-
566
;
Published in Advance
January 21, 2009
,
doi:
10.1101/gr.090233.108
Abstract
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Article
:
Diverse
cis
factors controlling
Alu
retrotransposition: What causes
Alu
elements to die?
Matthew S. Comeaux
,
Astrid M. Roy-Engel
,
Dale J. Hedges
,
and
Prescott L. Deininger
Genome Res.
April 2009
19
:
545
-
555
;
Published in Advance
March 9, 2009
,
doi:
10.1101/gr.089789.108
Abstract
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Article
:
Human gamma-satellite DNA maintains open chromatin structure and protects a transgene from epigenetic silencing
Jung-Hyun Kim
,
Thomas Ebersole
,
Natalay Kouprina
,
Vladimir N. Noskov
,
Jun-Ichirou Ohzeki
,
Hiroshi Masumoto
,
Brankica Mravinac
,
Beth A. Sullivan
,
Adam Pavlicek
,
Sinisa Dovat
,
Svetlana D. Pack
,
Yoo-Wook Kwon
,
Patrick T. Flanagan
,
Dmitri Loukinov
,
Victor Lobanenkov
,
and
Vladimir Larionov
Genome Res.
April 2009
19
:
533
-
544
;
Published in Advance
January 13, 2009
,
doi:
10.1101/gr.086496.108
Abstract
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Article
:
A canonical promoter organization of the transcription machinery and its regulators in the
Saccharomyces
genome
Bryan J. Venters
and
B. Franklin Pugh
Genome Res.
March 2009
19
:
360
-
371
;
Published in Advance
January 5, 2009
,
doi:
10.1101/gr.084970.108
Abstract
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Article
:
MEN ε/β
nuclear-retained non-coding RNAs are up-regulated upon muscle differentiation and are essential components of paraspeckles
Hongjae Sunwoo
,
Marcel E. Dinger
,
Jeremy E. Wilusz
,
Paulo P. Amaral
,
John S. Mattick
,
and
David L. Spector
Genome Res.
March 2009
19
:
347
-
359
;
Published in Advance
December 22, 2008
,
doi:
10.1101/gr.087775.108
Abstract
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