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Research

Frac-seq reveals isoform-specific recruitment to polyribosomes

  • First Published June 19, 2013
Research

Global analyses of UPF1 binding and function reveal expanded scope of nonsense-mediated mRNA decay

  • First Published June 13, 2013
Method

Network properties derived from deep sequencing of human B-cell receptor repertoires delineate B-cell populations

  • First Published June 6, 2013
Research

Epigenome-wide inheritance of cytosine methylation variants in a recombinant inbred population

  • First Published June 5, 2013
Research

The maize methylome influences mRNA splice sites and reveals widespread paramutation-like switches guided by small RNA

  • First Published June 5, 2013
Research

Comprehensive genome- and transcriptome-wide analyses of mutations associated with microsatellite instability in Korean gastric cancers

  • First Published June 4, 2013
Research

Next-generation sequencing of paired tyrosine kinase inhibitor-sensitive and -resistant EGFR mutant lung cancer cell lines identifies spectrum of DNA changes associated with drug resistance

  • First Published June 3, 2013
Research

Integrative phenomics reveals insight into the structure of phenotypic diversity in budding yeast

  • First Published May 29, 2013
Resource

Cell-type, allelic, and genetic signatures in the human pancreatic beta cell transcriptome

  • First Published May 28, 2013
Research

The genomic landscape of cohesin-associated chromatin interactions

  • First Published May 23, 2013
Research

Deletions of recessive disease genes: CNV contribution to carrier states and disease-causing alleles

  • First Published May 16, 2013
Research

Extensive chromosomal reshuffling drives evolution of virulence in an asexual pathogen

  • First Published May 16, 2013
Method

Proteome-wide discovery of mislocated proteins in cancer

  • First Published May 14, 2013
Research

Heliconius butterflies" > Genomic architecture of adaptive color pattern divergence and convergence in Heliconius butterflies

  • First Published May 14, 2013
Research

DNase-seq predicts regions of rotational nucleosome stability across diverse human cell types

  • First Published May 8, 2013
Research

HIV infection reveals widespread expansion of novel centromeric human endogenous retroviruses

  • First Published May 8, 2013
Research

NAHR-mediated copy-number variants in a clinical population: Mechanistic insights into both genomic disorders and Mendelizing traits

  • First Published May 8, 2013
Method

Arboretum: Reconstruction and analysis of the evolutionary history of condition-specific transcriptional modules

  • First Published May 2, 2013
Method

Saccharomyces cerevisiae" > Quantitative proteomic analysis reveals concurrent RNA–protein interactions and identifies new RNA-binding proteins in Saccharomyces cerevisiae

  • First Published May 1, 2013
Research

Social insect genomes exhibit dramatic evolution in gene composition and regulation while preserving regulatory features linked to sociality

  • First Published May 1, 2013
Erratum

Erratum

  • First Published May 1, 2013
Research

Enhancer transcripts mark active estrogen receptor binding sites

  • First Published May 1, 2013
Resource

C. elegans" > The transcription start site landscape of C. elegans

  • First Published May 1, 2013
Method

Mapping functional transcription factor networks from gene expression data

  • First Published May 1, 2013
Resource

The ancestor of extant Japanese fancy mice contributed to the mosaic genomes of classical inbred strains

  • First Published April 19, 2013
Method

Alu insertions in diverse human populations" > Mobile element scanning (ME-Scan) identifies thousands of novel Alu insertions in diverse human populations

  • First Published April 18, 2013
Research

NF-Y coassociates with FOS at promoters, enhancers, repetitive elements, and inactive chromatin regions, and is stereo-positioned with growth-controlling transcription factors

  • First Published April 17, 2013
Method

CG methylated microarrays identify a novel methylated sequence bound by the CEBPB|ATF4 heterodimer that is active in vivo

  • First Published April 16, 2013
Research

Roles for transcript leaders in translation and mRNA decay revealed by transcript leader sequencing

  • First Published April 11, 2013
Research

Maps of open chromatin highlight cell type–restricted patterns of regulatory sequence variation at hematological trait loci

  • First Published April 9, 2013
Method

Cancer translocations in human cells induced by zinc finger and TALE nucleases

  • First Published April 8, 2013
Research

Genome evolution during progression to breast cancer

  • First Published April 8, 2013
Research

Country-specific antibiotic use practices impact the human gut resistome

  • First Published April 8, 2013
Research

Acinetobacter baumannii during patient treatment" > Genomic insights into the fate of colistin resistance and Acinetobacter baumannii during patient treatment

  • First Published April 5, 2013
Method

Porphyromonas gingivalis recovered from a biofilm in a hospital sink using a high-throughput single-cell genomics platform" > Genome of the pathogen Porphyromonas gingivalis recovered from a biofilm in a hospital sink using a high-throughput single-cell genomics platform

  • First Published April 5, 2013
Method

Comprehensive prediction in 78 human cell lines reveals rigidity and compactness of transcription factor dimers

  • First Published April 3, 2013
Method

Inferring chromatin-bound protein complexes from genome-wide binding assays

  • First Published April 3, 2013
Resource

C. elegans reveals promoter and enhancer architectures" > The landscape of RNA polymerase II transcription initiation in C. elegans reveals promoter and enhancer architectures

  • First Published April 2, 2013
Research

A dynamic H3K27ac signature identifies VEGFA-stimulated endothelial enhancers and requires EP300 activity

  • First Published April 1, 2013
Erratum

Erratum

  • First Published April 1, 2013
Research

C. elegans insulin networks" > Complex expression dynamics and robustness in C. elegans insulin networks

  • First Published March 28, 2013
Research

Gene expression drives local adaptation in humans

  • First Published March 28, 2013
Research

HCFC1 is a common component of active human CpG-island promoters and coincides with ZNF143, THAP11, YY1, and GABP transcription factor occupancy

  • First Published March 28, 2013
Method

Chlamydia trachomatis directly from clinical samples without culture" > Whole-genome sequences of Chlamydia trachomatis directly from clinical samples without culture

  • First Published March 22, 2013
Research

Widespread and extensive lengthening of 3′ UTRs in the mammalian brain

  • First Published March 21, 2013
Research

Systematic dissection of regulatory motifs in 2000 predicted human enhancers using a massively parallel reporter assay

  • First Published March 19, 2013
Research

DNA-methylation effect on cotranscriptional splicing is dependent on GC architecture of the exon–intron structure

  • First Published March 15, 2013
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