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Research

Arabidopsis genome at the nuclear periphery" > Nonrandom domain organization of the Arabidopsis genome at the nuclear periphery

  • First Published April 6, 2017
Method

Short template switch events explain mutation clusters in the human genome

  • First Published April 6, 2017
Resource

Drosophila melanogaster" > The developmental proteome of Drosophila melanogaster

  • First Published April 5, 2017
Research

Dynamic RNA–protein interactions underlie the zebrafish maternal-to-zygotic transition

  • First Published April 5, 2017
Method

Direct determination of diploid genome sequences

  • First Published April 5, 2017
Perspective

Moving beyond Bermuda: sharing data to build a medical information commons

  • First Published April 3, 2017
Research

Drosophila melanogaster" > Single-molecule sequencing resolves the detailed structure of complex satellite DNA loci in Drosophila melanogaster

  • First Published April 3, 2017
Research

TERT aberrations in acral melanoma" > Integrated genomic analyses reveal frequent TERT aberrations in acral melanoma

  • First Published April 3, 2017
Corrigendum

Corrigendum: A novel translational control mechanism involving RNA structures within coding sequences

  • First Published April 3, 2017
Review

Genome graphs and the evolution of genome inference

  • First Published March 30, 2017
Method

MHC haplotypes reveal extreme coding variation in genes other than highly polymorphic HLA class I and II" > Sequences of 95 human MHC haplotypes reveal extreme coding variation in genes other than highly polymorphic HLA class I and II

  • First Published March 30, 2017
Research

Combination of short-read, long-read, and optical mapping assemblies reveals large-scale tandem repeat arrays with population genetic implications

  • First Published March 30, 2017
Research

Mechanisms of precise genome editing using oligonucleotide donors

  • First Published March 29, 2017
Research

Transcriptional regulatory dynamics drive coordinated metabolic and neural response to social challenge in mice

  • First Published March 29, 2017
Research

Combinatorial DNA methylation codes at repetitive elements

  • First Published March 27, 2017
Method

RNA-DNA hybrid (R-loop) immunoprecipitation mapping: an analytical workflow to evaluate inherent biases

  • First Published March 24, 2017
Research

PML protein organizes heterochromatin domains where it regulates histone H3.3 deposition by ATRX/DAXX

  • First Published March 24, 2017
Research

Small chromosomal regions position themselves autonomously according to their chromatin class

  • First Published March 24, 2017
Research

Diurnal regulation of RNA polymerase III transcription is under the control of both the feeding–fasting response and the circadian clock

  • First Published March 24, 2017
Research

In vivo binding of PRDM9 reveals interactions with noncanonical genomic sites

  • First Published March 23, 2017
Resource

Burkholderia cenocepacia during long-term chronic infection of cystic fibrosis lungs" > Phenotypic diversity and genotypic flexibility of Burkholderia cenocepacia during long-term chronic infection of cystic fibrosis lungs

  • First Published March 21, 2017
Research

Pan-cancer analysis distinguishes transcriptional changes of aneuploidy from proliferation

  • First Published March 20, 2017
Method

HINGE: long-read assembly achieves optimal repeat resolution

  • First Published March 20, 2017
Research

Time-dependent genetic effects on gene expression implicate aging processes

  • First Published March 16, 2017
Method

metaSPAdes: a new versatile metagenomic assembler

  • First Published March 15, 2017
Method

k-mer weighting and repeat separation" > Canu: scalable and accurate long-read assembly via adaptive k-mer weighting and repeat separation

  • First Published March 15, 2017
Research

Speciation network in Laurasiatheria: retrophylogenomic signals

  • First Published March 15, 2017
Research

Genome-wide analysis of differential RNA editing in epilepsy

  • First Published March 1, 2017
Corrigendum

Corrigendum: Large-scale mapping of gene regulatory logic reveals context-dependent repression by transcriptional activators

  • First Published March 1, 2017
Research

One thousand somatic SNVs per skin fibroblast cell set baseline of mosaic mutational load with patterns that suggest proliferative origin

  • First Published February 24, 2017
Method

ABySS 2.0: resource-efficient assembly of large genomes using a Bloom filter

  • First Published February 23, 2017
Research

Critical threshold levels of DNA methyltransferase 1 are required to maintain DNA methylation across the genome in human cancer cells

  • First Published February 23, 2017
Research

Transcriptome analyses of rhesus monkey preimplantation embryos reveal a reduced capacity for DNA double-strand break repair in primate oocytes and early embryos

  • First Published February 21, 2017
Research

Arabidopsis is unaltered by extreme divergence in CENH3 protein sequence" > Centromere location in Arabidopsis is unaltered by extreme divergence in CENH3 protein sequence

  • First Published February 21, 2017
Research

Distal CpG islands can serve as alternative promoters to transcribe genes with silenced proximal promoters

  • First Published February 21, 2017
Research

Genome surgery using Cas9 ribonucleoproteins for the treatment of age-related macular degeneration

  • First Published February 16, 2017
Method

Genome-wide chemical mutagenesis screens allow unbiased saturation of the cancer genome and identification of drug resistance mutations

  • First Published February 8, 2017
Research

Single-cell transcriptomics of the human placenta: inferring the cell communication network of the maternal-fetal interface

  • First Published February 7, 2017
Method

Microbial strain-level population structure and genetic diversity from metagenomes

  • First Published February 6, 2017
Method

Improving and correcting the contiguity of long-read genome assemblies of three plant species using optical mapping and chromosome conformation capture data

  • First Published February 3, 2017
Corrigendum

Corrigendum: Sumoylation of Rap1 mediates the recruitment of TFIID to promote transcription of ribosomal protein genes

  • First Published February 1, 2017
Research

Improved genome assembly of American alligator genome reveals conserved architecture of estrogen signaling

  • First Published January 30, 2017
Method

Aegilops tauschii, a progenitor of bread wheat, with the MaSuRCA mega-reads algorithm" > Hybrid assembly of the large and highly repetitive genome of Aegilops tauschii, a progenitor of bread wheat, with the MaSuRCA mega-reads algorithm

  • First Published January 27, 2017
Resource

Large-scale analysis of branchpoint usage across species and cell lines

  • First Published January 24, 2017
Method

HySA: a Hybrid Structural variant Assembly approach using next-generation and single-molecule sequencing technologies

  • First Published January 19, 2017
Method

Fast and accurate de novo genome assembly from long uncorrected reads

  • First Published January 18, 2017
Method

UMI-tools: modeling sequencing errors in Unique Molecular Identifiers to improve quantification accuracy

  • First Published January 18, 2017
Research

Single-cell transcriptome analysis of fish immune cells provides insight into the evolution of vertebrate immune cell types

  • First Published January 13, 2017
Research

Novel determinants of mammalian primary microRNA processing revealed by systematic evaluation of hairpin-containing transcripts and human genetic variation

  • First Published January 13, 2017
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