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Perspective

The genetics and epigenetics of satellite centromeres

  • First Published March 31, 2022
Research

The role of insulators and transcription in 3D chromatin organization of flies

  • First Published March 30, 2022
Research

A hidden layer of structural variation in transposable elements reveals potential genetic modifiers in human disease-risk loci

  • First Published March 24, 2022
Method

Global mapping of RNA homodimers in living cells

  • First Published March 24, 2022
Method

Classification and clustering of RNA crosslink-ligation data reveal complex structures and homodimers

  • First Published March 24, 2022
In memoriam

Haig H. Kazazian, Jr. (1937–2022)

  • First Published March 21, 2022
Method

A general framework for identifying oligogenic combinations of rare variants in complex disorders

  • First Published March 17, 2022
Method

A general calculus of fitness landscapes finds genes under selection in cancers

  • First Published March 17, 2022
Method

Sequencing of individual barcoded cDNAs using Pacific Biosciences and Oxford Nanopore Technologies reveals platform-specific error patterns

  • First Published March 17, 2022
Resource

Klebsiella metabolic models reveals variable substrate usage and gene essentiality" > A curated collection of Klebsiella metabolic models reveals variable substrate usage and gene essentiality

  • First Published March 11, 2022
Research

Genome-wide transcript and protein analysis highlights the role of protein homeostasis in the aging mouse heart

  • First Published March 11, 2022
Research

Paramecium" > GC content, but not nucleosome positioning, directly contributes to intron splicing efficiency in Paramecium

  • First Published March 9, 2022
Research

Paramecium macronuclear genome" > Broad domains of histone marks in the highly compact Paramecium macronuclear genome

  • First Published March 9, 2022
Method

Pan-human consensus genome significantly improves the accuracy of RNA-seq analyses

  • First Published March 7, 2022
Method

An association test of the spatial distribution of rare missense variants within protein structures identifies Alzheimer's disease–related patterns

  • First Published February 24, 2022
Method

Discovery of an unusually high number of de novo mutations in sperm of older men using duplex sequencing

  • First Published February 24, 2022
Method

Identification of phenotype-specific networks from paired gene expression–cell shape imaging data

  • First Published February 23, 2022
Method

A framework to score the effects of structural variants in health and disease

  • First Published February 23, 2022
Method

Low-input RNase footprinting for simultaneous quantification of cytosolic and mitochondrial translation

  • First Published February 22, 2022
Method

Predicting genotype-specific gene regulatory networks

  • First Published February 22, 2022
Research

Functional noncoding SNPs in human endothelial cells fine-map vascular trait associations

  • First Published February 22, 2022
In memoriam

C. Thomas Caskey (1938–2022)

  • First Published February 17, 2022
Research

Somatic structural variant formation is guided by and influences genome architecture

  • First Published February 17, 2022
Research

Accumulation and ineffective silencing of transposable elements on an avian W Chromosome

  • First Published February 11, 2022
Research

Whole-genome resequencing of temporally stratified samples reveals substantial loss of haplotype diversity in the highly inbred Scandinavian wolf population

  • First Published February 8, 2022
Method

NicE-C efficiently reveals open chromatin–associated chromosome interactions at high resolution

  • First Published February 1, 2022
Research

Enhancer–silencer transitions in the human genome

  • First Published February 1, 2022
Research

Genomic context sensitivity of insulator function

  • First Published January 26, 2022
Resource

Girardinichthys multiradiatus, and the evolution of sex chromosomes and placentation" > Genome biology of the darkedged splitfin, Girardinichthys multiradiatus, and the evolution of sex chromosomes and placentation

  • First Published January 26, 2022
Research

Mendelian randomization analyses implicate biogenesis of translation machinery in human aging

  • First Published January 25, 2022
Research

Joint actions of diverse transcription factor families establish neuron-type identities and promote enhancer selectivity

  • First Published January 24, 2022
In memoriam

Deborah A. Nickerson (1954 –2021)

  • First Published January 24, 2022
Resource

Mitochondrial DNA variation across 56,434 individuals in gnomAD

  • First Published January 24, 2022
Research

Plasma cell-free RNA characteristics in COVID-19 patients

  • First Published January 21, 2022
Research

Distal regulation, silencers, and a shared combinatorial syntax are hallmarks of animal embryogenesis

  • First Published January 19, 2022
Method

Domain-adaptive neural networks improve cross-species prediction of transcription factor binding

  • First Published January 18, 2022
Research

Characterization of transcript enrichment and detection bias in single-nucleus RNA-seq for mapping of distinct human adipocyte lineages

  • First Published January 18, 2022
Method

HBB gene region associated with adaptation and genetic disease" > De novo mutation rates at the single-mutation resolution in a human HBB gene region associated with adaptation and genetic disease

  • First Published January 14, 2022
Method

Accurate and robust inference of microbial growth dynamics from metagenomic sequencing reveals personalized growth rates

  • First Published January 5, 2022
Resource

Zebrafish transposable elements show extensive diversification in age, genomic distribution, and developmental expression

  • First Published January 5, 2022
Review

Advancing genomic technologies and clinical awareness accelerates discovery of disease-associated tandem repeat sequences

  • First Published December 29, 2021
Method

Antibody-free profiling of transcription factor occupancy during early embryogenesis by FitCUT&RUN

  • First Published December 29, 2021
Resource

Benchmarking small-variant genotyping in polyploids

  • First Published December 29, 2021
Resource

Anopheles coluzzii" > Transposable element variants and their potential adaptive impact in urban populations of the malaria vector Anopheles coluzzii

  • First Published December 29, 2021
Research

Meta-analysis of human and mouse ALS astrocytes reveals multi-omic signatures of inflammatory reactive states

  • First Published December 28, 2021
Research

Low-frequency somatic copy number alterations in normal human lymphocytes revealed by large-scale single-cell whole-genome profiling

  • First Published December 28, 2021
Method

A full-proteome, interaction-specific characterization of mutational hotspots across human cancers

  • First Published December 28, 2021
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