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PERSPECTIVE

Human Whole-Genome Shotgun Sequencing

James L. Weber
Eugene W. Myers

First Published May 1, 1997

RESEARCH

Cloning, Characterization, and Copy Number of the Murine Survival Motor Neuron Gene: Homolog of the Spinal Muscular Atrophy-Determining Gene

Christine J. DiDonato
Xiao-Ning Chen
David Noya
Julie R. Korenberg
Joseph H. Nadeau
Louise R. Simard

First Published April 1, 1997

LETTER

Exostoses 2 Gene and Characterization of Homologs in Mouse andCaenorhabditis elegans " > The Structure of the Human Multiple Exostoses 2 Gene and Characterization of Homologs in Mouse andCaenorhabditis elegans

Gregory A. Clines
Jennifer A. Ashley
Sangeeta Shah
Michael Lovett

First Published April 1, 1997

GENOME METHODS

Overlapping PCR for Bidirectional PCR Amplification of Specific Alleles: A Rapid One-Tube Method for Simultaneously Differentiating Homozygotes and Heterozygotes

Qiang Liu
Erik C. Thorland
John A. Heit
Steve S. Sommer

First Published April 1, 1997

RESEARCH

Analysis of the 1.1-Mb Human α/δ T-Cell Receptor Locus with Bacterial Artificial Chromosome Clones

Cecilie Boysen
Melvin I. Simon
Leroy Hood

First Published April 1, 1997

LETTER

Large-Scale Concatenation cDNA Sequencing

Wei Yu
Björn Andersson
Kim C. Worley
Donna M. Muzny
Yan Ding
Wen Liu
... [+1 authors] ...,
Jennifer Y. Ricafrente
Meredith A. Wentland
Greg Lennon
Richard A. Gibbs

First Published April 1, 1997

LETTER

UBE3A) Gene Is Localized within a Narrowed Angelman Syndrome Critical Region" > The E6–AP Ubiquitin–Protein Ligase (UBE3A) Gene Is Localized within a Narrowed Angelman Syndrome Critical Region

James S. Sutcliffe
Yong-hui Jiang
Robert-Jan Galjaard
Toshinobu Matsuura
Ping Fang
Takeo Kubota Susan L. Christian
... [+2 authors] ...,
Jan Bressler
Bruce Cattanach
David H. Ledbetter
Arthur L. Beaudet

First Published April 1, 1997

GENOME METHODS

Single-Nucleotide Polymorphism Identification Assays Using a Thermostable DNA Polymerase and Delayed Extraction MALDI-TOF Mass Spectrometry

Lawrence A. Haff
Igor P. Smirnov

First Published April 1, 1997

RESEARCH

Large-Scale Comparative Sequence Analysis of the Human and Murine Bruton’s Tyrosine Kinase Loci Reveals Conserved Regulatory Domains

John C. Oeltjen
Tracy M. Malley
Donna M. Muzny
Webb Miller
Richard A. Gibbs
John W. Belmont

First Published April 1, 1997

RESEARCH

Evolutionary Features of the 4-Mb Xq21.3 XY Homology Region Revealed by a Map at 60-kb Resolution

Steven Mumm
Barbara Molini
Jennifer Terrell
Anand Srivastava
David Schlessinger

First Published April 1, 1997

CORRECTION

Errata for vol. 7, p. 17

First Published April 1, 1997

REVIEW

The Unified Grass Genome: Synergy in Synteny

Jeffrey L. Bennetzen
Michael Freeling

First Published April 1, 1997

ARTICLE

Genome DNA sequencing around the EF-1 alpha multigene locus of Arabidopsis thaliana indicates a high gene density and a shuffling of noncoding regions.

D Tremousaygue
C Bardet
P Dabos
F Regad
F Pelese
R Nazer
E Gander
B Lescure

First Published March 1, 1997

ARTICLE

Identification of the complete coding sequence and genomic organization of the Treacher Collins syndrome gene.

J Dixon
S J Edwards
I Anderson
A Brass
P J Scambler
M J Dixon

First Published March 1, 1997

ARTICLE

2006 expressed-sequence tags derived from human chromosome 7-enriched cDNA libraries.

J W Touchman
G G Bouffard
L A Weintraub
J R Idol
L Wang
C M Robbins
J C Nussbaum
M Lovett
E D Green

First Published March 1, 1997

ARTICLE

One-megabase sequence analysis of the human immunoglobulin lambda gene locus.

K Kawasaki
S Minoshima
E Nakato
K Shibuya
A Shintani
J L Schmeits
J Wang
N Shimizu

First Published March 1, 1997

ARTICLE

Rapid sequence analysis of gene trap integrations to generate a resource of insertional mutations in mice.

D J Townley
B J Avery
B Rosen
W C Skarnes

First Published March 1, 1997

ARTICLE

Large-scale sequencing in human chromosome 12p13: experimental and computational gene structure determination.

M A Ansari-Lari
Y Shen
D M Muzny
W Lee
R A Gibbs

First Published March 1, 1997

ARTICLE

X chromosome map at 75-kb STS resolution, revealing extremes of recombination and GC content.

R Nagaraja
S MacMillan
J Kere
C Jones
S Griffin
M Schmatz J Terrell M Shomaker C Jermak C Hott M Masisi S Mumm A Srivastava G Pilia T Featherstone R Mazzarella S Kesterson B McCauley B Railey F Burough V Nowotny
... [+16 authors] ...,
M D'Urso
D States
B Brownstein
D Schlessinger

First Published March 1, 1997

ARTICLE

A second-generation linkage map of the bovine genome.

S M Kappes
J W Keele
R T Stone
R A McGraw
T S Sonstegard
T P Smith
N L Lopez-Corrales
C W Beattie

First Published March 1, 1997

ARTICLE

Phylogenetics of the laboratory rat Rattus norvegicus.

F Canzian

First Published March 1, 1997

REVIEW

Microfabrication technologies for integrated nucleic acid analysis.

D T Burke
M A Burns
C Mastrangelo

First Published March 1, 1997

ARTICLE

Mapping in the region of Danforth's short tail and the localization of tail length modifiers.

J B Alfred
K Rance
B A Taylor
S J Phillips
C M Abbott
I J Jackson

First Published February 1, 1997

ARTICLE

Isolation of chromosome-specific ESTs by microdissection-mediated cDNA capture.

E Gracia
M E Ray
M H Polymeropoulos
A Dehejia
P S Meltzer
J M Trent

First Published February 1, 1997

ARTICLE

Methods for precise sizing, automated binning of alleles, and reduction of error rates in large-scale genotyping using fluorescently labeled dinucleotide markers. FUSION (Finland-U.S. Investigation of NIDDM Genetics) Study Group.

S Ghosh
Z E Karanjawala
E R Hauser
D Ally
J I Knapp
J B Rayman A Musick J Tannenbaum C Te S Shapiro W Eldridge T Musick C Martin J R Smith J D Carpten M J Brownstein J I Powell R Whiten P Chines
... [+14 authors] ...,
S J Nylund
V L Magnuson
M Boehnke
F S Collins

First Published February 1, 1997

ARTICLE

Retrofitting vectors for Escherichia coli-based artificial chromosomes (PACs and BACs) with markers for transfection studies.

J E Mejía
A P Monaco

First Published February 1, 1997

ARTICLE

Confirmation of quantitative trait loci for ethanol sensitivity in long-sleep and short-sleep mice.

P D Markel
B Bennett
M Beeson
L Gordon
T E Johnson

First Published February 1, 1997

LETTER

The human reelin gene: isolation, sequencing, and mapping on chromosome 7.

U DeSilva
G D'Arcangelo
V V Braden
J Chen
G G Miao
T Curran
E D Green

First Published February 1, 1997

ARTICLE

Cloning and characterization of two vertebrate homologs of the Drosophila eyes absent gene.

J E Zimmerman
Q T Bui
E Steingrímsson
D L Nagle
W Fu
A Genin N B Spinner
... [+2 authors] ...,
N G Copeland
N A Jenkins
M Bucan
N M Bonini

First Published February 1, 1997

ARTICLE

Isolation of cDNAs from the Cri-du-chat critical region by direct screening of a chromosome 5-specific cDNA library.

A D Simmons
J Overhauser
M Lovett

First Published February 1, 1997

LETTER

Identification of a conserved family of Meis1-related homeobox genes.

S Steelman
J J Moskow
K Muzynski
C North
T Druck
J C Montgomery
K Huebner
I O Daar
A M Buchberg

First Published February 1, 1997

REVIEW

The human genome project and molecular anthropology.

M Stoneking

First Published February 1, 1997

LETTER

A collection of 1814 human chromosome 7-specific STSs.

G G Bouffard
L M Iyer
J R Idol
V V Braden
A F Cunningham
L A Weintraub R M Mohr-Tidwell
... [+2 authors] ...,
D C Peluso
R S Fulton
M P Leckie
E D Green

First Published January 1, 1997

LETTER

Identification and analysis of expression of human VACM-1, a cullin gene family member located on chromosome 11q22-23.

P J Byrd
T Stankovic
C M McConville
A D Smith
P R Cooper
A M Taylor

First Published January 1, 1997

ARTICLE

High-throughput microsatellite analysis using fluorescent dUTPs for high-resolution genetic mapping of the mouse genome.

M Rhodes
A Dearlove
R Straw
S Fernando
A Evans
M Greener T Lacey
... [+2 authors] ...,
M Kelly
K Gibson
S D Brown
C Mundy

First Published January 1, 1997

LETTER

Incognito rRNA and rDNA in databases and libraries.

I L Gonzalez
J E Sylvester

First Published January 1, 1997

LETTER

A chromosome-specific microdissected library increases marker density on bovine chromosome 1.

T S Sonstegard
F Abel Ponce de León
C W Beattie
S M Kappes

First Published January 1, 1997

ARTICLE

Gene identification in 1.6-Mb region of the Down syndrome region on chromosome 21.

M Ohira
N Seki
T Nagase
E Suzuki
N Nomura
O Ohara M Hattori Y Sakaki T Eki
... [+4 authors] ...,
Y Murakami
T Saito
H Ichikawa
M Ohki

First Published January 1, 1997

ARTICLE

Mapping expressed sequence tag sites on yeast artificial chromosome clones of Arabidopsis thaliana DNA.

F D Agyare
D A Lashkari
A Lagos
A F Namath
G Lagos
R W Davis
B Lemieux

First Published January 1, 1997

ARTICLE

Identification and localization of the gene for EXTL, a third member of the multiple exostoses gene family.

C A Wise
G A Clines
H Massa
B J Trask
M Lovett

First Published January 1, 1997

ARTICLE

A region of mouse chromosome 16 is syntenic to the DiGeorge, velocardiofacial syndrome minimal critical region.

N Galili
H S Baldwin
J Lund
R Reeves
W Gong
Z Wang B A Roe B S Emanuel
... [+3 authors] ...,
S Nayak
C Mickanin
M L Budarf
C A Buck

First Published January 1, 1997

ARTICLE

4.5-Mb YAC STS contig at 50-kb resolution, spanning Xq25 deletions in two patients with lymphoproliferative syndrome.

G Porta
S MacMillan
R Nagaraja
S Mumm
I Zucchi
G Pilia
S Maio
T Featherstone
D Schlessinger

First Published January 1, 1997

ARTICLE

Telomeric organization of a variable and inducible toxin gene family in the ancient eukaryote Giardia duodenalis.

P Upcroft
N Chen
J A Upcroft

First Published January 1, 1997

LETTERS

Genomic structure of the human OB receptor and identification of two novel intronic microsatellites.

W K Chung
L Power-Kehoe
M Chua
R Lee
R L Leibel

First Published December 1, 1996

LETTERS

Structure of the human alpha 2 subunit gene of the glycine receptor--use of vectorette and Alu-exon PCR.

U Monani
A H Burghes

First Published December 1, 1996

ARTICLES

Long-range mapping and construction of a YAC contig within the cat eye syndrome critical region.

H E McDermid
K E McTaggart
M A Riazi
T J Hudson
M L Budarf
B S Emanuel
C J Bell

First Published December 1, 1996

ARTICLES

The marine bacterium Pseudoalteromonas haloplanktis has a complex genome structure composed of two separate genetic units.

B D Lanoil
L M Ciuffetti
S J Giovannoni

First Published December 1, 1996

LETTERS

G protein alpha subunit multigene family in the Japanese puffer fish Fugu rubripes: PCR from a compact vertebrate genome.

M M Sarwal
J M Sontag
L Hoang
S Brenner
T M Wilkie

First Published December 1, 1996

ARTICLES

Fugu intron oversize reveals the presence of U15 snoRNA coding sequences in some introns of the ribosomal protein S3 gene.

C Crosio
F Cecconi
P Mariottini
G Cesareni
S Brenner
F Amaldi

First Published December 1, 1996

ARTICLES

Conserved linkage between the puffer fish (Fugu rubripes) and human genes for platelet-derived growth factor receptor and macrophage colony-stimulating factor receptor.

G F How
B Venkatesh
S Brenner

First Published December 1, 1996

ARTICLES

Chromosome-specific panels of tri- and tetranucleotide microsatellite markers for multiplex fluorescent detection and automated genotyping: evaluation of their utility in pathology and forensics.

A K Lindqvist
P K Magnusson
J Balciuniene
C Wadelius
E Lindholm
M E Alarcón-Riquelme
U B Gyllensten

First Published December 1, 1996

LETTERS

Isolation and genomic structure of a human homolog of the yeast periodic tryptophan protein 2 (PWP2) gene mapping to 21q22.3.

R G Lafrenière
D L Rochefort
N Chrétien
C E Neville
R G Korneluk
L Zuo
Y Wei
J Lichter
G A Rouleau

First Published December 1, 1996

ARTICLES

Statistical methods for gene map construction by fluorescence in situ hybridization.

S W Guo
W L Flejter

First Published December 1, 1996

ARTICLES

Dispersion of human Y chromosome haplotypes based on five microsatellites in global populations.

R Deka
L Jin
M D Shriver
L M Yu
N Saha
R Barrantes
R Chakraborty
R E Ferrell

First Published December 1, 1996

ARTICLES

Novel susceptibility locus for mouse hepatomas: evidence for a conserved tumor suppressor gene.

J C Zenklusen
L V Rodriguez
M LaCava
Z Wang
L S Goldstein
C J Conti

First Published November 1, 1996

ARTICLES

Long-range map of a 3.5-Mb region in Xp11.23-22 with a sequence-ready map from a 1.1-Mb gene-rich interval.

D Schindelhauer
H Hellebrand
L Grimm
I Bader
T Meitinger
M Wehnert
M Ross
A Meindl

First Published November 1, 1996

ARTICLES

A nonsense mutation in the cathepsin K gene observed in a family with pycnodysostosis.

M R Johnson
M H Polymeropoulos
H L Vos
R I Ortiz de Luna
C A Francomano

First Published November 1, 1996

LETTERS

The exon structure of the mouse Sc1 gene is very similar to the mouse Sparc gene.

P J McKinnon
M Kapsetaki
R F Margolskee

First Published November 1, 1996

ARTICLES

End sequence determination from large insert clones using energy transfer fluorescent primers.

M Marra
L A Weinstock
E R Mardis

First Published November 1, 1996

ARTICLES

A simple and efficient method for making site-directed mutants, deletions, and fusions of large DNA such as P1 and BAC clones.

J Borén
I Lee
M J Callow
E M Rubin
T L Innerarity

First Published November 1, 1996

LETTERS

Alu fossil relics--distribution and insertion polymorphism.

S S Arcot
A W Adamson
J E Lamerdin
B Kanagy
P L Deininger
A V Carrano
M A Batzer

First Published November 1, 1996

LETTERS

Mapping the RP2 locus for X-linked retinitis pigmentosa on proximal Xp: a genetically defined 5-cM critical region and exclusion of candidate genes by physical mapping.

D L Thiselton
R M Hampson
M Nayudu
L Van Maldergem
M L Wolf
B K Saha
S S Bhattacharya
A J Hardcastle

First Published November 1, 1996

LETTERS

Isolation and characterization of the mouse cystatin B gene.

L A Pennacchio
R M Myers

First Published November 1, 1996

ARTICLES

Lane tracking software for four-color fluorescence-based electrophoretic gel images.

M L Cooper
D R Maffitt
J D Parsons
L Hillier
D J States

First Published November 1, 1996

ARTICLES

Complete genomic sequence and analysis of 117 kb of human DNA containing the gene BRCA1.

T M Smith
M K Lee
C I Szabo
N Jerome
M McEuen
M Taylor
L Hood
M C King

First Published November 1, 1996

ARTICLES

Transcriptional analysis of the candidate region for incontinentia pigmenti (IP2) in Xq28.

U C Rogner
N S Heiss
P Kioschis
S Wiemann
B Korn
A Poustka

First Published October 1, 1996

ARTICLES

An integrated YAC map of the human X chromosome.

H Roest Crollius
M T Ross
A Grigoriev
C J Knights
E Holloway
J Misfud K Li M Playford S G Gregory S J Humphray A J Coffey C G See S Marsh R Vatcheva J Kumlien T Labella V Lam K H Rak K Todd R Mott D Graeser
... [+16 authors] ...,
G Rappold
G Zehetner
A Poustka
H Lehrach

First Published October 1, 1996

LETTERS

Site-selected mutagenesis of the Drosophila second chromosome via plasmid rescue of lethal P-element insertions.

Y Guo
A Gillan
T Török
I Kiss
J A Dow
K Kaiser

First Published October 1, 1996

LETTERS

Fine structure of the human galactokinase GALK1 gene.

D J Bergsma
Y Ai
W R Skach
K Nesburn
E Anoia
S Van Horn
D Stambolian

First Published October 1, 1996

ARTICLES

An ordered yeast artificial chromosome library covering over half of rice chromosome 6.

Y Umehara
H Tanoue
N Kurata
I Ashikawa
Y Minobe
T Sasaki

First Published October 1, 1996

ARTICLES

A novel method for real time quantitative RT-PCR.

U E Gibson
C A Heid
P M Williams

First Published October 1, 1996

ARTICLES

Use of a fluorescent-PCR reaction to detect genomic sequence copy number and transcriptional abundance.

P W Chiang
W J Song
K Y Wu
J R Korenberg
E J Fogel
M L Van Keuren
D Lashkari
D M Kurnit

First Published October 1, 1996

ARTICLES

Utilization of FISH in positional cloning: an example on 13q22.

M Laan
J Isosomppi
T Klockars
L Peltonen
A Palotie

First Published October 1, 1996

REVIEW

Livestock genomics comes of age.

M Georges
L Andersson

First Published October 1, 1996

ARTICLES

Bovine natural resistance associated macrophage protein 1 (Nramp1) gene.

J Feng
Y Li
M Hashad
E Schurr
P Gros
L G Adams
J W Templeton

First Published October 1, 1996

ARTICLES

An expanded CAG repeat sequence in spinocerebellar ataxia type 7.

K Lindblad
M L Savontaus
G Stevanin
M Holmberg
K Digre
C Zander H Ehrsson G David A Benomar E Nikoskelainen Y Trottier G Holmgren
... [+7 authors] ...,
L J Ptacek
A Anttinen
A Brice
M Schalling

First Published October 1, 1996

ARTICLES

Real time quantitative PCR.

C A Heid
J Stevens
K J Livak
P M Williams

First Published October 1, 1996

ARTICLE

Comparative analysis of 1196 orthologous mouse and human full-length mRNA and protein sequences.

W Makałowski
J Zhang
M S Boguski

First Published September 1, 1996

ARTICLE

Tracing an ancestral mutation: genealogical and haplotype analysis of the infantile onset spinocerebellar ataxia locus.

T Varilo
K Nikali
A Suomalainen
T Lönnqvist
L Peltonen

First Published September 1, 1996

LETTER

Cloning of the murine homolog of the ocular albinism type 1 (OA1) gene: sequence, genomic structure, and expression analysis in pigment cells.

M T Bassi
B Incerti
D J Easty
E V Sviderskaya
A Ballabio

First Published September 1, 1996

ARTICLE

Intron 17 of the human retinoblastoma susceptibility gene encodes an actively transcribed G protein-coupled receptor gene.

H Herzog
K Darby
Y J Hort
J Shine

First Published September 1, 1996

ARTICLE

Use of asymmetric PCR to generate long primers and single-stranded DNA for incorporating cross-linking analogs into specific sites in a DNA probe.

C I Wooddell
R R Burgess

First Published September 1, 1996

ARTICLE

Sensitivity, reproducibility, and accuracy in short tandem repeat genotyping using capillary array electrophoresis.

E S Mansfield
M Vainer
S Enad
D L Barker
D Harris
E Rappaport
P Fortina

First Published September 1, 1996

ARTICLE

Toward the development of a gene index to the human genome: an assessment of the nature of high-throughput EST sequence data.

J S Aaronson
B Eckman
R A Blevins
J A Borkowski
J Myerson
S Imran
K O Elliston

First Published September 1, 1996

ARTICLE

Fine mapping of the autosomal dominant juvenile open angle glaucoma (GLC1A) region and evaluation of candidate genes.

S L Sunden
W L Alward
B E Nichols
T R Rokhlina
A Nystuen
E M Stone
V C Sheffield

First Published September 1, 1996

ARTICLE

Generation and analysis of 280,000 human expressed sequence tags.

L D Hillier
G Lennon
M Becker
M F Bonaldo
B Chiapelli
S Chissoe N Dietrich T DuBuque A Favello W Gish M Hawkins M Hultman T Kucaba M Lacy M Le N Le E Mardis B Moore M Morris J Parsons C Prange
... [+16 authors] ...,
L Rifkin
T Rohlfing
K Schellenberg
M Marra

First Published September 1, 1996

ARTICLE

Normalization and subtraction: two approaches to facilitate gene discovery.

M F Bonaldo
G Lennon
M B Soares

First Published September 1, 1996

LETTER

Mutations in sheep microsatellites.

A M Crawford
R P Cuthbertson

First Published September 1, 1996

EDITORIAL

The End of the Beginning: The Race to Begin Human Genome Sequencing

Mark Boguski
Aravinda Chakravarti
Richard Gibbs
Eric Green
Richard M. Myers

First Published September 1, 1996

REVIEW

Lessons learned, promises kept: a biologist's eye view of the Genome Project.

S M Tilghman

First Published September 1, 1996

REVIEW

An approach to high-throughput genotyping.

J M Hall
C A LeDuc
A R Watson
A H Roter

First Published September 1, 1996

REVIEW

Perspectives: sequence data base searching in the era of large-scale genomic sequencing.

R F Smith

First Published August 1, 1996

ARTICLE

Evidence for linkage of regions on chromosomes 6 and 11 to plasma glucose concentrations in Mexican Americans.

M P Stern
R Duggirala
B D Mitchell
L J Reinhart
S Shivakumar
P A Shipman
... [+1 authors] ...,
O C Uresandi
E Benavides
J Blangero
P O'Connell

First Published August 1, 1996

ARTICLE

Direct cDNA selection with DNA microdissected from mouse chromosome 16: isolation of novel clones and construction of a partial transcription map of the C3-C4 region.

J Wei
M E Hodes
Y Wang
Y Feng
B Ghetti
S R Dlouhy

First Published August 1, 1996

ARTICLE

Cloning of 559 potential exons of genes of human chromosome 21 by exon trapping.

H Chen
R Chrast
C Rossier
M A Morris
M D Lalioti
S E Antonarakis

First Published August 1, 1996

ARTICLE

Characterization of the 55-kb mouse histone gene cluster on chromosome 3.

Z F Wang
R Tisovec
R W Debry
M R Frey
A G Matera
W F Marzluff

First Published August 1, 1996

ARTICLE

Isolation and mapping of novel mouse brain cDNA clones containing trinucleotide repeats, and demonstration of novel alleles in recombinant inbred strains.

D M Chambers
C M Abbott

First Published August 1, 1996

ARTICLE

A linkage map of the ovine X chromosome.

S M Galloway
V Hanrahan
K G Dodds
M D Potts
A M Crawford
D F Hill

First Published August 1, 1996

ARTICLE

Hybrid selection as a method of increasing mapping power for radiation hybrids.

H B Jones

First Published August 1, 1996

ARTICLE

Identification of a novel paternally expressed transcript adjacent to snRPN in the Prader-Willi syndrome critical region.

Y Ning
A Roschke
S L Christian
J Lesser
J S Sutcliffe
D H Ledbetter

First Published August 1, 1996

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