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LETTER

Early Genetic Mechanisms Underlying the Inhibitory Effects of Endostatin and Fumagillin on Human Endothelial Cells

Chiara M. Mazzanti
Anita Tandle
Dominique Lorang
Nick Costouros
David Roberts
Generoso Bevilacqua
Steven K. Libutti

First Published August 2, 2004

LETTER

E. coli Genome: SIDD Sites Are Closely Associated With Promoters" > Stress-Induced DNA Duplex Destabilization (SIDD) in the E. coli Genome: SIDD Sites Are Closely Associated With Promoters

Huiquan Wang
Michiel Noordewier
Craig J. Benham

First Published August 2, 2004

Methods

Histoplasma capsulatum Genome" > Fosmid-Based Physical Mapping of the Histoplasma capsulatum Genome

Vincent Magrini
Wesley C. Warren
John Wallis
William E. Goldman
Jian Xu
Elaine R. Mardis
John D. McPherson

First Published August 2, 2004

Methods

Arabidopsis" > The Use of MPSS for Whole-Genome Transcriptional Analysis in Arabidopsis

Blake C. Meyers
Shivakundan Singh Tej
Tam H. Vu
Christian D. Haudenschild
Vikas Agrawal
Steve B. Edberg
Hassan Ghazal
Shannon Decola

First Published August 2, 2004

Methods

Elucidation of Gene Interaction Networks Through Time-Lagged Correlation Analysis of Transcriptional Data

William A. Schmitt
R. Michael Raab
Gregory Stephanopoulos

First Published August 2, 2004

Methods

A Non-EST-Based Method for Exon-Skipping Prediction

Rotem Sorek
Ronen Shemesh
Yuval Cohen
Ortal Basechess
Gil Ast
Ron Shamir

First Published August 2, 2004

LETTER

Giardia lamblia" > Evolution of Eukaryotic Transcription: Insights From the Genome of Giardia lamblia

Aaron A. Best
Hilary G. Morrison
Andrew G. McArthur
Mitchell L. Sogin
Gary J. Olsen

First Published August 2, 2004

LETTER

Genetic Divergence of the Rhesus Macaque Major Histocompatibility Complex

Riza Daza-Vamenta
Gustavo Glusman
Lee Rowen
Brandon Guthrie
Daniel E. Geraghty

First Published August 2, 2004

LETTER

Comparative Analysis of Gene Expression for Convergent Evolution of Camera Eye Between Octopus and Human

Atsushi Ogura
Kazuho Ikeo
Takashi Gojobori

First Published August 2, 2004

LETTER

Segmental Phylogenetic Relationships of Inbred Mouse Strains Revealed by Fine-Scale Analysis of Sequence Variation Across 4.6 Mb of Mouse Genome

Kelly A. Frazer
Claire M. Wade
David A. Hinds
Nila Patil
David R. Cox
Mark J. Daly

First Published August 2, 2004

ARTICLE

Regional Patterns of Gene Expression in Human and Chimpanzee Brains

Philipp Khaitovich
Bjoern Muetzel
Xinwei She
Michael Lachmann
Ines Hellmann
Janko Dietzsch Stephan Steigele Hong-Hai Do Gunter Weiss Wolfgang Enard Florian Heissig
... [+6 authors] ...,
Thomas Arendt
Kay Nieselt-Struwe
Evan E. Eichler
Svante Pääbo

First Published August 2, 2004

ARTICLE

Mycoplasma mobile" > The Complete Genome and Proteome of Mycoplasma mobile

Jacob D. Jaffe
Nicole Stange-Thomann
Cherylyn Smith
David DeCaprio
Sheila Fisher
Jonathan Butler Sarah Calvo Tim Elkins Michael G. FitzGerald Nabil Hafez Chinnappa D. Kodira John Major Shunguang Wang Jane Wilkinson Robert Nicol
... [+10 authors] ...,
Chad Nusbaum
Bruce Birren
Howard C. Berg
George M. Church

First Published August 2, 2004

LETTER

Clustering of DNA Sequences in Human Promoters

Peter C. FitzGerald
Andrey Shlyakhtenko
Alain A. Mir
Charles Vinson

First Published July 15, 2004

Methods

Haplotype and Missing Data Inference in Nuclear Families

Shin Lin
Aravinda Chakravarti
David J. Cutler

First Published July 15, 2004

LETTER

Plasmodium falciparum" > Comparative Genomics of Transcriptional Control in the Human Malaria Parasite Plasmodium falciparum

Richard M.R. Coulson
Neil Hall
Christos A. Ouzounis

First Published July 15, 2004

LETTER

Segmental Duplications Flank the Multiple Sclerosis Locus on Chromosome 17q

Daniel C. Chen
Janna Saarela
Royden A. Clark
Timo Miettinen
Anthony Chi
Evan E. Eichler
Leena Peltonen
Aarno Palotie

First Published July 15, 2004

LETTER

The Binding Sites for the Chromatin Insulator Protein CTCF Map to DNA Methylation-Free Domains Genome-Wide

Rituparna Mukhopadhyay
WenQiang Yu
Joanne Whitehead
JunWang Xu
Magda Lezcano
Svetlana Pack Chandrasekhar Kanduri Meena Kanduri Vasudeva Ginjala Alexander Vostrov Wolfgang Quitschke
... [+6 authors] ...,
Igor Chernukhin
Elena Klenova
Victor Lobanenkov
Rolf Ohlsson

First Published July 15, 2004

Chicken Special/Letters

The repetitive landscape of the chicken genome

Thomas Wicker
Jon S. Robertson
Stefan R. Schulze
F. Alex Feltus
Vincent Magrini
Jason A. Morrison Elaine R. Mardis
... [+2 authors] ...,
Richard K. Wilson
Daniel G. Peterson
Andrew H. Paterson
Robert Ivarie

First Published July 15, 2004

LETTER

Comparative Evolutionary Genomics of Androgen-Binding Protein Genes

Richard D. Emes
Matthew C. Riley
Christina M. Laukaitis
Leo Goodstadt
Robert C. Karn
Chris P. Ponting

First Published July 15, 2004

LETTER

cis-Regulatory and Protein Evolution in Orthologous and Duplicate Genes" > cis-Regulatory and Protein Evolution in Orthologous and Duplicate Genes

Cristian I. Castillo-Davis
Daniel L. Hartl
Guillaume Achaz

First Published July 15, 2004

LETTER

Incongruent Patterns of Local and Global Genome Size Evolution in Cotton

Corrinne E. Grover
HyeRan Kim
Rod A. Wing
Andrew H. Paterson
Jonathan F. Wendel

First Published July 15, 2004

ERRATUM

Correction for Volume 14, p. 742

First Published July 1, 2004

Methods

Staphylococcus aureus" > Regulog Analysis: Detection of Conserved Regulatory Networks Across Bacteria: Application to Staphylococcus aureus

Wynand B.L. Alkema
Boris Lenhard
Wyeth W. Wasserman

First Published July 1, 2004

LETTER

Two Breakpoint Clusters at Fragile Site FRA3B Form Phased Nucleosomes

David J. Mulvihill
Yuh-Hwa Wang

First Published July 1, 2004

RESOURCE

Single Nucleotide Polymorphisms Associated With Rat Expressed Sequences

Victor Guryev
Eugene Berezikov
Rainer Malik
Ronald H.A. Plasterk
Edwin Cuppen

First Published July 1, 2004

LETTER

SLIT3 in the Chinese Han Population" > Genetic Structure Adds Power to Detect Schizophrenia Susceptibility at SLIT3 in the Chinese Han Population

YongYong Shi
XinZhi Zhao
Lan Yu
Ran Tao
JunXia Tang
YuJuan La Yun Duan Bo Gao NiuFan Gu YiFeng Xu GuoYin Feng
... [+6 authors] ...,
ShaoMin Zhu
HuiJun Liu
Hugh Salter
Lin He

First Published July 1, 2004

Methods

Mauve: Multiple Alignment of Conserved Genomic Sequence With Rearrangements

Aaron C.E. Darling
Bob Mau
Frederick R. Blattner
Nicole T. Perna

First Published July 1, 2004

Methods

Global Survey of Chromatin Accessibility Using DNA Microarrays

M. Ryan Weil
Piotr Widlak
John D. Minna
Harold R. Garner

First Published July 1, 2004

ERRATUM

Correction for Volume 14, p. 414

First Published July 1, 2004

LETTER

Human Haplotype Block Sizes Are Negatively Correlated With Recombination Rates

Tiffany A. Greenwood
Brinda K. Rana
Nicholas J. Schork

First Published July 1, 2004

Methods

SNP Discovery in Pooled Samples With Mismatch Repair Detection

Hossein Fakhrai-Rad
Jianbiao Zheng
Thomas D. Willis
Kee Wong
Kent Suyenaga
Martin Moorhead Jim Eberle Yvonne R. Thorstenson
... [+3 authors] ...,
Ted Jones
Ronald W. Davis
Eugeni Namsaraev
Malek Faham

First Published July 1, 2004

RESOURCE

A 1463 Gene Cattle–Human Comparative Map With Anchor Points Defined by Human Genome Sequence Coordinates

Annelie Everts-van der Wind
Srinivas R. Kata
Mark R. Band
Mark Rebeiz
Denis M. Larkin
Robin E. Everts Cheryl A. Green Lei Liu Shreedhar Natarajan Tom Goldammer
... [+5 authors] ...,
Jun Heon Lee
Stephanie McKay
James E. Womack
Harris A. Lewin

First Published July 1, 2004

LETTER

A Protein Interaction Framework for Human mRNA Degradation

Ben Lehner
Christopher M. Sanderson

First Published July 1, 2004

LETTER

Evolution and Topology in the Yeast Protein Interaction Network

Stefan Wuchty

First Published July 1, 2004

LETTER

Saccharomyces cerevisiae" > Recovery of a Function Involving Gene Duplication by Retroposition in Saccharomyces cerevisiae

Joseph Schacherer
Yves Tourrette
Jean-Luc Souciet
Serge Potier
Jacky de Montigny

First Published July 1, 2004

LETTER

Functional Proteomics Mapping of a Human Signaling Pathway

Frédéric Colland
Xavier Jacq
Virginie Trouplin
Christelle Mougin
Caroline Groizeleau
Alexandre Hamburger
... [+1 authors] ...,
Alain Meil
Jérôme Wojcik
Pierre Legrain
Jean-Michel Gauthier

First Published July 1, 2004

LETTER

Transcript Level Alterations Reflect Gene Dosage Effects Across Multiple Tissues in a Mouse Model of Down Syndrome

Pascal Kahlem
Marc Sultan
Ralf Herwig
Matthias Steinfath
Daniela Balzereit
Barbara Eppens Nidhi G. Saran Mathew T. Pletcher Sarah T. South
... [+4 authors] ...,
Gail Stetten
Hans Lehrach
Roger H. Reeves
Marie-Laure Yaspo

First Published July 1, 2004

LETTER

Genetic Variation in Coding Regions Between and Within Commonly Used Inbred Rat Strains

Bart M.G. Smits
Bert F.M. van Zutphen
Ronald H.A. Plasterk
Edwin Cuppen

First Published July 1, 2004

LETTER

Gene Expression From the Aneuploid Chromosome in a Trisomy Mouse Model of Down Syndrome

Robert Lyle
Corinne Gehrig
Charlotte Neergaard-Henrichsen
Samuel Deutsch
Stylianos E. Antonarakis

First Published July 1, 2004

ARTICLE

Caenorhabditis Reveals Frequent Loss of Introns During Nematode Evolution" > A Phylogeny of Caenorhabditis Reveals Frequent Loss of Introns During Nematode Evolution

Soochin Cho
Suk-Won Jin
Adam Cohen
Ronald E. Ellis

First Published July 1, 2004

LETTER

ABCB1 Multidrug Resistance Gene" > Identifying Candidate Causal Variants Responsible for Altered Activity of the ABCB1 Multidrug Resistance Gene

Nicole Soranzo
Gianpiero L. Cavalleri
Michael E. Weale
Nicholas W. Wood
Chantal Depondt
Richard Marguerie
Sanjay M. Sisodiya
David B. Goldstein

First Published June 14, 2004

LETTER

Local Definition of Ty1 Target Preference by Long Terminal Repeats and Clustered tRNA Genes

Nurjana Bachman
Yolanda Eby
Jef D. Boeke

First Published June 14, 2004

Methods

A Transcript Finishing Initiative for Closing Gaps in the Human Transcriptome

Mari Cleide Sogayar
Anamaria A. Camargo

First Published June 14, 2004

LETTER

Saccharomyces cerevisiae iND750, a Fully Compartmentalized Genome-Scale Metabolic Model" > Reconstruction and Validation of Saccharomyces cerevisiae iND750, a Fully Compartmentalized Genome-Scale Metabolic Model

Natalie C. Duarte
Markus J. Herrgård
Bernhard Ø. Palsson

First Published June 14, 2004

Methods

Drosophila melanogaster" > An Efficient Method to Generate Chromosomal Rearrangements by Targeted DNA Double-Strand Breaks in Drosophila melanogaster

Dieter Egli
Ernst Hafen
Walter Schaffner

First Published June 14, 2004

ARTICLE

The Insertional History of an Active Family of L1 Retrotransposons in Humans

Stéphane Boissinot
Ali Entezam
Lynn Young
Peter J. Munson
Anthony V. Furano

First Published June 14, 2004

LETTER

Fugu rubripes" > Extensive Expansion of the Claudin Gene Family in the Teleost Fish, Fugu rubripes

Yong Hwee Loh
Alan Christoffels
Sydney Brenner
Walter Hunziker
Byrappa Venkatesh

First Published June 14, 2004

LETTER

Comparative Sequence and X-Inactivation Analyses of a Domain of Escape in Human Xp11.2 and the Conserved Segment in Mouse

Karen D. Tsuchiya
John M. Greally
Yajun Yi
Kevin P. Noel
Jean-Pierre Truong
Christine M. Disteche

First Published June 14, 2004

RESOURCE

WebLogo: A Sequence Logo Generator

Gavin E. Crooks
Gary Hon
John-Marc Chandonia
Steven E. Brenner

First Published June 1, 2004

RESOURCE

eShadow: A Tool for Comparing Closely Related Sequences

Ivan Ovcharenko
Dario Boffelli
Gabriela G. Loots

First Published June 1, 2004

Methods

Recombinatorial Cloning Using Heterologous Lox Sites

Robert W. Siegel
Nileena Velappan
Peter Pavlik
Leslie Chasteen
Andrew Bradbury

First Published June 1, 2004

LETTER

Alu Mobilization and Polymorphism Among the Human and Chimpanzee Lineages" > Differential Alu Mobilization and Polymorphism Among the Human and Chimpanzee Lineages

Dale J. Hedges
Pauline A. Callinan
Richard Cordaux
Jinchuan Xing
Erin Barnes
Mark A. Batzer

First Published June 1, 2004

Methods

Annotation Transfer Between Genomes: Protein–Protein Interologs and Protein–DNA Regulogs

Haiyuan Yu
Nicholas M. Luscombe
Hao Xin Lu
Xiaowei Zhu
Yu Xia
Jing-Dong J. Han
... [+1 authors] ...,
Nicolas Bertin
Sambath Chung
Marc Vidal
Mark Gerstein

First Published June 1, 2004

Methods

DNA Mapping Using Microfluidic Stretching and Single-Molecule Detection of Fluorescent Site-Specific Tags

Eugene Y. Chan
Nuno M. Goncalves
Rebecca A. Haeusler
Amie J. Hatch
Jonathan W. Larson
Anthony M. Maletta Gregory R. Yantz Eugene D. Carstea
... [+3 authors] ...,
Martin Fuchs
Gordon G. Wong
Steven R. Gullans
Rudolf Gilmanshin

First Published June 1, 2004

Methods

Building Genomic Profiles for Uncovering Segmental Homology in the Twilight Zone

Cedric Simillion
Klaas Vandepoele
Yvan Saeys
Yves Van de Peer

First Published June 1, 2004

LETTER

Arabidopsis thaliana" > Coexpression of Neighboring Genes in the Genome of Arabidopsis thaliana

Elizabeth J.B. Williams
Dianna J. Bowles

First Published June 1, 2004

Methods

Automatic Identification of Subcellular Phenotypes on Human Cell Arrays

Christian Conrad
Holger Erfle
Patrick Warnat
Nathalie Daigle
Thomas Lörch
Jan Ellenberg
Rainer Pepperkok
Roland Eils

First Published June 1, 2004

LETTER

Coexpression Analysis of Human Genes Across Many Microarray Data Sets

Homin K. Lee
Amy K. Hsu
Jon Sajdak
Jie Qin
Paul Pavlidis

First Published June 1, 2004

LETTER

E. coli" > Bacterial Genomes as New Gene Homes: The Genealogy of ORFans in E. coli

Vincent Daubin
Howard Ochman

First Published June 1, 2004

ARTICLE

Trypanosoma brucei Involved in Antigenic Variation Are Constructed Around Repetitive Palindromes" > The Small Chromosomes of Trypanosoma brucei Involved in Antigenic Variation Are Constructed Around Repetitive Palindromes

Bill Wickstead
Klaus Ersfeld
Keith Gull

First Published June 1, 2004

Insight/Outlook

Genomics, Prior Probability, and Statistical Tests of Multiple Hypotheses

Kenneth F. Manly
Dan Nettleton
J.T. Gene Hwang

First Published June 1, 2004

LETTER

Saccharomyces Sensu Stricto Complex" > Comparative Genomic Hybridization Provides New Insights Into the Molecular Taxonomy of the Saccharomyces Sensu Stricto Complex

Laura C. Edwards-Ingram
Manda E. Gent
David C. Hoyle
Andrew Hayes
Lubomira I. Stateva
Stephen G. Oliver

First Published June 1, 2004

ARTICLE

Genomic Regionality in Rates of Evolution Is Not Explained by Clustering of Genes of Comparable Expression Profile

Martin J. Lercher
Jean-Vincent Chamary
Laurence D. Hurst

First Published June 1, 2004

RESOURCE

Large-Scale Integration of Human Genetic and Physical Maps

Caroline M. Nievergelt
Douglas W. Smith
J. Bradley Kohlenberg
Nicholas J. Schork

First Published May 12, 2004

Methods

Using the miraEST Assembler for Reliable and Automated mRNA Transcript Assembly and SNP Detection in Sequenced ESTs

Bastien Chevreux
Thomas Pfisterer
Bernd Drescher
Albert J. Driesel
Werner E.G. Müller
Thomas Wetter
Sándor Suhai

First Published May 12, 2004

LETTER

Halobacterium NRC-1" > Systems Level Insights Into the Stress Response to UV Radiation in the Halophilic Archaeon Halobacterium NRC-1

Nitin S. Baliga
Sarah J. Bjork
Richard Bonneau
Min Pan
Chika Iloanusi
Molly C.H. Kottemann
Leroy Hood
Jocelyne DiRuggiero

First Published May 12, 2004

Methods

Visualizing Sequence Similarity of Protein Families

Vamsi Veeramachaneni
Wojciech Makałowski

First Published May 12, 2004

LETTER

Plasmodium Gene Family Encoding Maurer's Cleft Membrane Proteins: Structural Properties and Expression Profiling" > A Plasmodium Gene Family Encoding Maurer's Cleft Membrane Proteins: Structural Properties and Expression Profiling

Tobili Y. Sam-Yellowe
Laurence Florens
Jeffrey R. Johnson
Tongmin Wang
Judith A. Drazba
Karine G. Le Roch Yingyao Zhou
... [+2 authors] ...,
Serge Batalov
Daniel J. Carucci
Elizabeth A. Winzeler
John R. Yates

First Published May 12, 2004

LETTER

Putative Ancestral Origins of Chromosomal Segments in Individual African Americans: Implications for Admixture Mapping

Michael F. Seldin
Takanobu Morii
Heather E. Collins-Schramm
Bill Chima
Rick Kittles
Lindsey A. Criswell
Hongzhe Li

First Published May 12, 2004

RESOURCE

Complete MHC Haplotype Sequencing for Common Disease Gene Mapping

C. Andrew Stewart
Roger Horton
Richard J.N. Allcock
Jennifer L. Ashurst
Alexey M. Atrazhev
Penny Coggill Ian Dunham Simon Forbes Karen Halls Joanna M.M. Howson Sean J. Humphray Sarah Hunt Andrew J. Mungall Kazutoyo Osoegawa Sophie Palmer Anne N. Roberts Jane Rogers Sarah Sims Yu Wang Laurens G. Wilming John F. Elliott Pieter J. de Jong
... [+17 authors] ...,
Stephen Sawcer
John A. Todd
John Trowsdale
Stephan Beck

First Published May 12, 2004

Methods

Predicting Protein Complex Membership Using Probabilistic Network Reliability

Saurabh Asthana
Oliver D. King
Francis D. Gibbons
Frederick P. Roth

First Published May 12, 2004

ENSEMBL Special

ESTGenes: Alternative Splicing From ESTs in Ensembl

Eduardo Eyras
Mario Caccamo
Val Curwen
Michele Clamp

First Published May 3, 2004

ENSEMBL Special

The Ensembl Core Software Libraries

Arne Stabenau
Graham McVicker
Craig Melsopp
Glenn Proctor
Michele Clamp
Ewan Birney

First Published May 3, 2004

ENSEMBL Special

The Otter Annotation System

Stephen M.J. Searle
James Gilbert
Vivek Iyer
Michele Clamp

First Published May 3, 2004

ENSEMBL Special

GeneWise and Genomewise

Ewan Birney
Michele Clamp
Richard Durbin

First Published May 3, 2004

ENSEMBL Special

The Ensembl Web Site: Mechanics of a Genome Browser

James Stalker
Brian Gibbins
Patrick Meidl
James Smith
William Spooner
Hans-Rudolf Hotz
Antony V. Cox

First Published May 3, 2004

ENSEMBL Special

Sockeye: A 3D Environment for Comparative Genomics

Stephen B. Montgomery
Tamara Astakhova
Mikhail Bilenky
Ewan Birney
Tony Fu
Maik Hassel Craig Melsopp Marcin Rak
... [+3 authors] ...,
A. Gordon Robertson
Monica Sleumer
Asim S. Siddiqui
Steven J.M. Jones

First Published May 3, 2004

ENSEMBL Special

The Ensembl Automatic Gene Annotation System

Val Curwen
Eduardo Eyras
T. Daniel Andrews
Laura Clarke
Emmanuel Mongin
Steven M.J. Searle
Michele Clamp

First Published May 3, 2004

ENSEMBL Special

The Ensembl Analysis Pipeline

Simon C. Potter
Laura Clarke
Val Curwen
Stephen Keenan
Emmanuel Mongin
Stephen M.J. Searle
Arne Stabenau
Roy Storey
Michele Clamp

First Published May 3, 2004

ENSEMBL Special

The Ensembl Computing Architecture

James A. Cuff
Guy M.P. Coates
Tim J.R. Cutts
Mark Rae

First Published May 3, 2004

Methods

Two Methods of Whole-Genome Amplification Enable Accurate Genotyping Across a 2320-SNP Linkage Panel

David L. Barker
Mark S.T. Hansen
A. Fawad Faruqi
Diane Giannola
Orlando R. Irsula
Roger S. Lasken Martin Latterich Vladimir Makarov Arnold Oliphant Jonathon H. Pinter
... [+5 authors] ...,
Richard Shen
Irina Sleptsova
William Ziehler
Eric Lai

First Published May 3, 2004

Methods

A Versatile Assay for High-Throughput Gene Expression Profiling on Universal Array Matrices

Jian-Bing Fan
Joanne M. Yeakley
Marina Bibikova
Eugene Chudin
Eliza Wickham
Jing Chen Dennis Doucet Philippe Rigault Baohong Zhang Richard Shen Celeste McBride Hai-Ri Li
... [+7 authors] ...,
Xiang-Dong Fu
Arnold Oliphant
David L. Barker
Mark S. Chee

First Published May 3, 2004

Methods

Compositional Gene Landscapes in Vertebrates

Stéphane Cruveiller
Kamel Jabbari
Oliver Clay
Giorgio Bernardi

First Published May 3, 2004

LETTER

Dynamics of a Human Interparalog Gene Conversion Hotspot

Elena Bosch
Matthew E. Hurles
Arcadi Navarro
Mark A. Jobling

First Published May 3, 2004

LETTER

Cis-Regulation" > A Global View of the Selection Forces in the Evolution of Yeast Cis-Regulation

Amos Tanay
Irit Gat-Viks
Ron Shamir

First Published May 3, 2004

LETTER

Testing the Chromosomal Speciation Hypothesis for Humans and Chimpanzees

Jianzhi Zhang
Xiaoxia Wang
Ondrej Podlaha

First Published May 3, 2004

ARTICLE

The Functional Genomic Distribution of Protein Divergence in Two Animal Phyla: Coevolution, Genomic Conflict, and Constraint

Cristian I. Castillo-Davis
Fyodor A. Kondrashov
Daniel L. Hartl
Rob J. Kulathinal

First Published May 3, 2004

LETTER

The Human MitoChip: A High-Throughput Sequencing Microarray for Mitochondrial Mutation Detection

Anirban Maitra
Yoram Cohen
Susannah E.D. Gillespie
Elizabeth Mambo
Noriyoshi Fukushima
Mohammad O. Hoque Nila Shah
... [+2 authors] ...,
Michael Goggins
Joseph Califano
David Sidransky
Aravinda Chakravarti

First Published May 3, 2004

ARTICLE

Analysis of Segmental Duplications and Genome Assembly in the Mouse

Jeffrey A. Bailey
Deanna M. Church
Mario Ventura
Mariano Rocchi
Evan E. Eichler

First Published May 3, 2004

LETTER

Analyses of LTR-Retrotransposon Structures Reveal Recent and Rapid Genomic DNA Loss in Rice

Jianxin Ma
Katrien M. Devos
Jeffrey L. Bennetzen

First Published April 12, 2004

Methods

Systematic Insertional Mutagenesis of a Streptomycete Genome: A Link Between Osmoadaptation and Antibiotic Production

Amy Bishop
Sue Fielding
Paul Dyson
Paul Herron

First Published April 12, 2004

Methods

Haplotype Block Partitioning and Tag SNP Selection Using Genotype Data and Their Applications to Association Studies

Kui Zhang
Zhaohui S. Qin
Jun S. Liu
Ting Chen
Michael S. Waterman
Fengzhu Sun

First Published April 12, 2004

ENSEMBL Special

An Overview of Ensembl

Ewan Birney
T. Daniel Andrews
Paul Bevan
Mario Caccamo
Yuan Chen
Laura Clarke Guy Coates James Cuff Val Curwen Tim Cutts Thomas Down Eduardo Eyras Xose M. Fernandez-Suarez Paul Gane Brian Gibbins James Gilbert Martin Hammond Hans-Rudolf Hotz Vivek Iyer Kerstin Jekosch Andreas Kahari Arek Kasprzyk Damian Keefe Stephen Keenan Heikki Lehvaslaiho Graham McVicker Craig Melsopp Patrick Meidl Emmanuel Mongin Roger Pettett Simon Potter Glenn Proctor Mark Rae Steve Searle Guy Slater Damian Smedley James Smith Will Spooner Arne Stabenau James Stalker Roy Storey Abel Ureta-Vidal K. Cara Woodwark Graham Cameron
... [+39 authors] ...,
Richard Durbin
Anthony Cox
Tim Hubbard
Michele Clamp

First Published April 12, 2004

LETTER

Comparison of Human Chromosome 21 Conserved Nongenic Sequences (CNGs) With the Mouse and Dog Genomes Shows That Their Selective Constraint Is Independent of Their Genic Environment

Emmanouil T. Dermitzakis
Ewen Kirkness
Scott Schwarz
Ewan Birney
Alexandre Reymond
Stylianos E. Antonarakis

First Published April 12, 2004

LETTER

A Medaka Gene Map: The Trace of Ancestral Vertebrate Proto-Chromosomes Revealed by Comparative Gene Mapping

Kiyoshi Naruse
Minoru Tanaka
Kazuei Mita
Akihiro Shima
John Postlethwait
Hiroshi Mitani

First Published April 12, 2004

RESOURCE

Plasmodium falciparum Metabolism: Organizing Genomic Information to Facilitate Drug Discovery" > Computational Analysis of Plasmodium falciparum Metabolism: Organizing Genomic Information to Facilitate Drug Discovery

Iwei Yeh
Theodor Hanekamp
Sophia Tsoka
Peter D. Karp
Russ B. Altman

First Published April 12, 2004

Methods

Decoding Randomly Ordered DNA Arrays

Kevin L. Gunderson
Semyon Kruglyak
Michael S. Graige
Francisco Garcia
Bahram G. Kermani
Chanfeng Zhao Diping Che Todd Dickinson Eliza Wickham Jim Bierle Dennis Doucet Monika Milewski Robert Yang Chris Siegmund Juergen Haas Lixin Zhou
... [+11 authors] ...,
Arnold Oliphant
Jian-Bing Fan
Steven Barnard
Mark S. Chee

First Published April 12, 2004

ERRATUM

Correction for Volume 14, p. 414

First Published April 1, 2004

RESOURCE

The Atlas Genome Assembly System

Paul Havlak
Rui Chen
K. James Durbin
Amy Egan
Yanru Ren
Xing-Zhi Song
George M. Weinstock
Richard A. Gibbs

First Published April 1, 2004

ERRATUM

Correction for Volume 13, p. 103

First Published April 1, 2004

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