Your search for returned 6,373 results
Method
Genome assembly quality: Assessment and improvement using the neutral indel model
- First Published March 19, 2010
Research
Deep RNA sequencing at single base-pair resolution reveals high complexity of the rice transcriptome
- First Published March 19, 2010
Research
Rewirable gene regulatory networks in the preimplantation embryonic development of three mammalian species
- First Published March 10, 2010
Research
The (r)evolution of SINE versus LINE distributions in primate genomes: Sex chromosomes are important
- First Published March 10, 2010
Research
A CTCF-independent role for cohesin in tissue-specific transcription
- First Published March 10, 2010
Research
MRC1-dependent scaling of the budding yeast DNA replication timing program" > MRC1-dependent scaling of the budding yeast DNA replication timing program
- First Published March 10, 2010
Research
Age-dependent DNA methylation of genes that are suppressed in stem cells is a hallmark of cancer
- First Published March 10, 2010
Method
Integrating multiple evidence sources to predict transcription factor binding in the human genome
- First Published March 10, 2010
Research
Human aging-associated DNA hypermethylation occurs preferentially at bivalent chromatin domains
- First Published March 10, 2010
Research
The effect of translocation-induced nuclear reorganization on gene expression
- First Published March 8, 2010
Resource
Analysis of copy number variations among diverse cattle breeds
- First Published March 8, 2010
Research
Coexpression network analysis of neural tissue reveals perturbations in developmental processes in schizophrenia
- First Published March 2, 2010
Research
Genome-wide analysis of histone modifications in human pancreatic islets
- First Published February 24, 2010
Research
Examination of transcriptional networks reveals an important role for TCFAP2C, SMARCA4, and EOMES in trophoblast stem cell maintenance
- First Published February 22, 2010
Resource
Accurate detection and genotyping of SNPs utilizing population sequencing data
- First Published February 11, 2010
Methods
Inference of RhoGAP/GTPase regulation using single-cell morphological data from a combinatorial RNAi screen
- First Published February 9, 2010
Research
Positioned and G/C-capped poly(dA:dT) tracts associate with the centers of nucleosome-free regions in yeast promoters
- First Published February 4, 2010
Method
Digital transcriptome profiling from attomole-level RNA samples
- First Published February 4, 2010
Letter
Dynamic changes in the human methylome during differentiation
- First Published February 4, 2010
Methods
A new strategy for genome assembly using short sequence reads and reduced representation libraries
- First Published February 1, 2010
Letter
ATRX interacts with H3.3 in maintaining telomere structural integrity in pluripotent embryonic stem cells
- First Published January 28, 2010
Letter
Widespread and tissue specific age-related DNA methylation changes in mice
- First Published January 27, 2010
Research
Impact of replication timing on non-CpG and CpG substitution rates in mammalian genomes
- First Published January 26, 2010
Letter
Copy number abnormalities in sporadic canine colorectal cancers
- First Published January 19, 2010
Review
Population genetic inference from genomic sequence variation
- First Published January 12, 2010
Letter
Evolutionary constraint facilitates interpretation of genetic variation in resequenced human genomes
- First Published January 12, 2010
Research
Genome-wide evidence for selection acting on single amino acid repeats
- First Published January 7, 2010
Resource
A high-resolution association mapping panel for the dissection of complex traits in mice
- First Published January 6, 2010
Letter
Nucleosome landscape and control of transcription in the human malaria parasite
- First Published January 6, 2010
Methods
Cross-mapping and the identification of editing sites in mature microRNAs in high-throughput sequencing libraries
- First Published January 5, 2010
Letter
Schizosaccharomyces pombe" > High-throughput sequencing of retrotransposon integration provides a saturated profile of target activity in Schizosaccharomyces pombe
- First Published December 29, 2009
Letter
Human genetic variation recognizes functional elements in noncoding sequence
- First Published December 23, 2009
Letter
Changes in the pattern of DNA methylation associate with twin discordance in systemic lupus erythematosus
- First Published December 22, 2009
Resource
A SNP discovery method to assess variant allele probability from next-generation resequencing data
- First Published December 17, 2009
Resource
De novo assembly of human genomes with massively parallel short read sequencing
- First Published December 17, 2009
Letter
Sex-specific and lineage-specific alternative splicing in primates
- First Published December 15, 2009
Letter
Bayesian network analysis of targeting interactions in chromatin
- First Published December 9, 2009
Article
Genome-wide dynamics of replication timing revealed by in vitro models of mouse embryogenesis
- First Published December 1, 2009
Letter
Ecological adaptation determines functional mammalian olfactory subgenomes
- First Published December 1, 2009
Methods
Estimating population genetic parameters and comparing model goodness-of-fit using DNA sequences with error
- First Published December 1, 2009
Methods
Targeted chromosomal deletions in human cells using zinc finger nucleases
- First Published December 1, 2009
Letter
Drosophila" > Population dynamics of PIWI-interacting RNAs (piRNAs) and their targets in Drosophila
- First Published November 30, 2009
Letter
Genome-wide mapping of SMAD target genes reveals the role of BMP signaling in embryonic stem cell fate determination
- First Published November 19, 2009
Letter
Industrial fuel ethanol yeasts contain adaptive copy number changes in genes involved in vitamin B1 and B6 biosynthesis
- First Published November 6, 2009
Letter
A novel active endogenous retrovirus family contributes to genome variability in rat inbred strains
- First Published November 3, 2009
Letter
DNA methylation programming and reprogramming in primate embryonic stem cells
- First Published November 3, 2009
Article
Erythroid GATA1 function revealed by genome-wide analysis of transcription factor occupancy, histone modifications, and mRNA expression
- First Published November 3, 2009
Methods
Detection of nonneutral substitution rates on mammalian phylogenies
- First Published October 26, 2009
Letter
A novel strategy of transcription regulation by intragenic nucleosome ordering
- First Published October 26, 2009
Letter
Arabidopsis thaliana" > Genome-wide mapping of alternative splicing in Arabidopsis thaliana
- First Published October 26, 2009
Resource
ProPhylER: A curated online resource for protein function and structure based on evolutionary constraint analyses
- First Published October 21, 2009
Methods
High-resolution nucleosome mapping reveals transcription-dependent promoter packaging
- First Published October 21, 2009
Methods
Salmonella Typhi gene using one million transposon mutants" > Simultaneous assay of every Salmonella Typhi gene using one million transposon mutants
- First Published October 13, 2009
Letter
Human capacitance to dosage imbalance: Coping with inefficient selection
- First Published October 9, 2009
Resource
Windshield splatter analysis with the Galaxy metagenomic pipeline
- First Published October 9, 2009
Perspective
Phylogenomics of primates and their ancestral populations
- First Published October 3, 2009
Methods
Rapid inexpensive genome-wide association using pooled whole blood
- First Published October 3, 2009
Article
Genomic determination of the glucocorticoid response reveals unexpected mechanisms of gene regulation
- First Published October 2, 2009
Letter
Saccharomyces cerevisiae" > A positive but complex association between meiotic double-strand break hotspots and open chromatin in Saccharomyces cerevisiae
- First Published October 2, 2009
Resource
C. elegans ORFeome" > Large-scale RACE approach for proactive experimental definition of C. elegans ORFeome
- First Published October 2, 2009
Letter
Coexpression network based on natural variation in human gene expression reveals gene interactions and functions
- First Published October 1, 2009
Methods
Automatic analysis of dividing cells in live cell movies to detect mitotic delays and correlate phenotypes in time
- First Published October 1, 2009
Methods
Rapid identification of homologous recombinants and determination of gene copy number with reference/query pyrosequencing (RQPS)
- First Published October 1, 2009
Letter
Do genetic recombination and gene density shape the pattern of DNA elimination in rice long terminal repeat retrotransposons?
- First Published September 29, 2009
Methods
Predictable dynamic program of timing of DNA replication in human cells
- First Published September 18, 2009
Letter
Relative contribution of sequence and structure features to the mRNA binding of Argonaute/EIF2C–miRNA complexes and the degradation of miRNA targets
- First Published September 18, 2009
Letter
Repertoire and evolution of miRNA genes in four divergent nematode species
- First Published September 15, 2009
Methods
Two-parameter characterization of chromosome-scale recombination rate
- First Published September 14, 2009
Letter
Candida dubliniensis and Candida albicans" > Comparative genomics of the fungal pathogens Candida dubliniensis and Candida albicans
- First Published September 10, 2009
Letter
Complex selection on 5′ splice sites in intron-rich organisms
- First Published September 10, 2009
Letter
Comparison of diverse developmental transcriptomes reveals that coexpression of gene neighbors is not evolutionarily conserved
- First Published September 10, 2009
Letter
Rapid evolution of mouse Y centromere repeat DNA belies recent sequence stability
- First Published September 8, 2009
Methods
An ensemble model of competitive multi-factor binding of the genome
- First Published August 31, 2009
Letter
Coccidioides and their relatives" > Comparative genomic analyses of the human fungal pathogens Coccidioides and their relatives
- First Published August 28, 2009
Letter
Chromatin poises miRNA- and protein-coding genes for expression
- First Published August 27, 2009
Letter
Deeply conserved chordate noncoding sequences preserve genome synteny but do not drive gene duplicate retention
- First Published August 24, 2009
Resource
Singapore Genome Variation Project: A haplotype map of three Southeast Asian populations
- First Published August 21, 2009
Letter
Elucidation of the ELK1 target gene network reveals a role in the coordinate regulation of core components of the gene regulation machinery
- First Published August 17, 2009