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Method

Detecting somatic mutations in rare clones using single-cell multiomics

Rhys Gillman
Sonam Dukda
Jerome Sadir
Raymond H Y Louie
Chris Goodnow
Fabio Luciani
Mandeep Singh
Matt A Field

First Published August 13, 2026

Resource

A pangenome framework uncovers the role of deletions in repeated evolution of cave-derived traits

Emma Y. Roback
Maggs X
Edward S. Ricemeyer
Adam Warlen
Rachel A. Carroll
Christine G. Elsik
... [+1 authors] ...,
Alex C. Keene
Nicolas Rohner
Suzanne E. McGaugh
Wesley C. Warren

First Published August 13, 2026

Method

Pattern-Filter structural validation of single-cell RNA-seq reads reduces artifactual barcodes and improves biological resolution

Qiang Su
Xiaoming Zhou
Yi Long
Fuyu Duan
Qizhou Lian

First Published August 12, 2026

Method

A SNP panel for coanalysis of capture and shotgun ancient DNA data

Romain Fournier
Alice Pearson Fulton
Daniel Tabin
David Reich

First Published August 12, 2026

Resource

Uniform processing and analysis of IGVF massively parallel reporter assay data with MPRAsnakeflow

Jonathan D. Rosen
Arjun Devadas Vasanthakumari
Kilian Salomon
Nikola de Lange
Pyaree Mohan Dash
Pia Keukeleire Ali Hassan Alejandro Barrera Beniamin Krupkin
... [+4 authors] ...,
Grace Oualline
Martin Kircher
Michael I. Love
Max Schubach

First Published August 11, 2026

Research

Fetal signatures in the 3D genome of iPSC-derived neurons and their implications for disease modeling

Diana Zagirova
Anna Kononkova
Kirill Morozov
Maria Molodova
Nikita Vaulin
Anastasiia Dudkovskaia Polina Dozorova Olga Efimova Anna Tvorogova Kirill Ulianov Philipp Khaitovich
... [+6 authors] ...,
Sergey Razin
Maria Lagarkova
Sergey Ulianov
Ekaterina Khrameeva

First Published August 3, 2026

Research

Moderated designs can balance between batch-effect mitigation and cell loss due to hashtag-assisted pooling in single-cell experiments

Budha Chatterjee
Katrina Gorga
Carly Blair
Yuko Ohta
Michelle Radov
Elizabeth M Hill
Christopher T Boughter
Martin Meier-Schellersheim
Nevil J. Singh

First Published July 30, 2026

Research

MEIS1 in conferring sleep abnormalities and impaired cerebellar development" > Cross-species variant-to-function analyses implicate MEIS1 in conferring sleep abnormalities and impaired cerebellar development

Amber J. Zimmerman
Erika Almeraya Del Valle
Matthew C. Pahl
Fusun Doldur-Balli
Brendan T. Keenan
Patrick Z. Liu Zoe Y. Shetty Trisha R. Tsundupalli Justin Palermo Anitra Krishnan James A. Pippin Andrew D. Wells Olivia J. Veatch Alessandra Chesi
... [+9 authors] ...,
Philip R. Gehrman
Alex C. Keene
Allan I. Pack
Struan F.A. Grant

First Published July 30, 2026

Method

Knowledge-driven interpretable neural networks provide mechanistic insight

Yan Ke
Tianwei Yu

First Published July 24, 2026

Method

Fast and memory efficient partial order alignment with minipoa

Haodong Liu
Pinglu Zhang
Yanming Wei
Qinzhong Tian
Yixiao Zhai
Quan Zou
Mengting Niu

First Published July 24, 2026

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