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Method

Chromatin and sequence features that define the fine and gross structure of genomic methylation patterns

  • John R. Edwards
  • Anne H. O'Donnell
  • Robert A. Rollins
  • Heather E. Peckham
  • Clarence Lee
  • Maria H. Milekic Benjamin Chanrion Yutao Fu Tao Su Hanina Hibshoosh
  • ... [+5 authors] ...,
  • Jay A. Gingrich
  • Fatemeh Haghighi
  • Robert Nutter
  • Timothy H. Bestor
  • First Published May 20, 2010
Methods

Sequence and structural variation in a human genome uncovered by short-read, massively parallel ligation sequencing using two-base encoding

  • Kevin Judd McKernan
  • Heather E. Peckham
  • Gina L. Costa
  • Stephen F. McLaughlin
  • Yutao Fu
  • Eric F. Tsung Christopher R. Clouser Cisyla Duncan Jeffrey K. Ichikawa Clarence C. Lee Zheng Zhang Swati S. Ranade Eileen T. Dimalanta Fiona C. Hyland Tanya D. Sokolsky Lei Zhang Andrew Sheridan Haoning Fu Cynthia L. Hendrickson Bin Li Lev Kotler Jeremy R. Stuart Joel A. Malek Jonathan M. Manning Alena A. Antipova Damon S. Perez Michael P. Moore Kathleen C. Hayashibara Michael R. Lyons Robert E. Beaudoin Brittany E. Coleman Michael W. Laptewicz Adam E. Sannicandro Michael D. Rhodes Rajesh K. Gottimukkala Shan Yang Vineet Bafna Ali Bashir Andrew MacBride Can Alkan Jeffrey M. Kidd
  • ... [+36 authors] ...,
  • Evan E. Eichler
  • Martin G. Reese
  • Francisco M. De La Vega
  • Alan P. Blanchard
  • First Published June 22, 2009
LETTER

Systematic evaluation of variability in ChIP-chip experiments using predefined DNA targets

  • David S. Johnson
  • Wei Li
  • D. Benjamin Gordon
  • Arindam Bhattacharjee
  • Bo Curry
  • Jayati Ghosh Leonardo Brizuela Jason S. Carroll Myles Brown Paul Flicek Christoph M. Koch Ian Dunham Mark Bieda Xiaoqin Xu Peggy J. Farnham Philipp Kapranov David A. Nix Thomas R. Gingeras Xinmin Zhang Heather Holster Nan Jiang Roland D. Green Jun S. Song Scott A. McCuine Elizabeth Anton Loan Nguyen Nathan D. Trinklein Zhen Ye Keith Ching David Hawkins Bing Ren Peter C. Scacheri Joel Rozowsky Alexander Karpikov Ghia Euskirchen Sherman Weissman Mark Gerstein Michael Snyder Annie Yang Zarmik Moqtaderi Heather Hirsch Hennady P. Shulha Yutao Fu Zhiping Weng
  • ... [+39 authors] ...,
  • Kevin Struhl
  • Richard M. Myers
  • Jason D. Lieb
  • X. Shirley Liu
  • First Published February 7, 2008
LETTER

Nucleosome positioning signals in genomic DNA

  • Heather E. Peckham
  • Robert E. Thurman
  • Yutao Fu
  • John A. Stamatoyannopoulos
  • William Stafford Noble
  • Kevin Struhl
  • Zhiping Weng
  • First Published July 9, 2007
LETTER

Statistical analysis of the genomic distribution and correlation of regulatory elements in the ENCODE regions

  • Zhengdong D. Zhang
  • Alberto Paccanaro
  • Yutao Fu
  • Sherman Weissman
  • Zhiping Weng
  • Joseph Chang
  • Michael Snyder
  • Mark B. Gerstein
  • First Published June 13, 2007
LETTER

Analysis of overrepresented motifs in human core promoters reveals dual regulatory roles of YY1

  • Hualin Xi
  • Yong Yu
  • Yutao Fu
  • Jonathan Foley
  • Anason Halees
  • Zhiping Weng
  • First Published June 13, 2007
LETTER

Transcription factor binding and modified histones in human bidirectional promoters

  • Jane M. Lin
  • Patrick J. Collins
  • Nathan D. Trinklein
  • Yutao Fu
  • Hualin Xi
  • Richard M. Myers
  • Zhiping Weng
  • First Published June 13, 2007
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