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Ultra-long-range interactions between active regulatory elements

Elias T. Friman
Ilya M. Flyamer
Davide Marenduzzo
Shelagh Boyle
Wendy A. Bickmore

First Published July 14, 2023

Comprehensive analysis of structural variants in breast cancer genomes using single-molecule sequencing

Sergey Aganezov
Sara Goodwin
Rachel M. Sherman
Fritz J. Sedlazeck
Gayatri Arun
Sonam Bhatia Isac Lee Melanie Kirsche Robert Wappel Melissa Kramer Karen Kostroff
... [+6 authors] ...,
David L. Spector
Winston Timp
W. Richard McCombie
Michael C. Schatz

First Published September 4, 2020

Complex rearrangements and oncogene amplifications revealed by long-read DNA and RNA sequencing of a breast cancer cell line

Maria Nattestad
Sara Goodwin
Karen Ng
Timour Baslan
Fritz J. Sedlazeck
Philipp Rescheneder Tyler Garvin Han Fang James Gurtowski Elizabeth Hutton Elizabeth Tseng Chen-Shan Chin Timothy Beck Yogi Sundaravadanam Melissa Kramer Eric Antoniou
... [+11 authors] ...,
John D. McPherson
James Hicks
W. Richard McCombie
Michael C. Schatz

First Published June 28, 2018

A comparative transcriptional landscape of maize and sorghum obtained by single-molecule sequencing

Bo Wang
Michael Regulski
Elizabeth Tseng
Andrew Olson
Sara Goodwin
W. Richard McCombie
Doreen Ware

First Published April 30, 2018

Oxford Nanopore sequencing, hybrid error correction, and de novo assembly of a eukaryotic genome

Sara Goodwin
James Gurtowski
Scott Ethe-Sayers
Panchajanya Deshpande
Michael C. Schatz
W. Richard McCombie

First Published October 7, 2015

The frequent evolutionary birth and death of functional promoters in mouse and human

Robert S. Young
Yoshihide Hayashizaki
Robin Andersson
Albin Sandelin
Hideya Kawaji
Masayoshi Itoh Timo Lassmann
... [+2 authors] ...,
Piero Carninci
Wendy A. Bickmore
Alistair R. Forrest
Martin S. Taylor

First Published July 30, 2015

H4K16 acetylation marks active genes and enhancers of embryonic stem cells, but does not alter chromatin compaction

Gillian C.A. Taylor
Ragnhild Eskeland
Betül Hekimoglu-Balkan
Madapura M. Pradeepa
Wendy A. Bickmore

First Published August 29, 2013

The maize methylome influences mRNA splice sites and reveals widespread paramutation-like switches guided by small RNA

Michael Regulski
Zhenyuan Lu
Jude Kendall
Mark T.A. Donoghue
Jon Reinders
Victor Llaca Stephane Deschamps Andrew Smith Dan Levy W. Richard McCombie Scott Tingey
... [+6 authors] ...,
Antoni Rafalski
James Hicks
Doreen Ware
Robert A. Martienssen

First Published June 5, 2013

Dynamics of the epigenetic landscape during erythroid differentiation after GATA1 restoration

Weisheng Wu
Yong Cheng
Cheryl A. Keller
Jason Ernst
Swathi Ashok Kumar
Tejaswini Mishra Christapher Morrissey Christine M. Dorman Kuan-Bei Chen Daniela Drautz Belinda Giardine Yoichiro Shibata Lingyun Song Max Pimkin Gregory E. Crawford Terrence S. Furey Manolis Kellis Webb Miller James Taylor Stephan C. Schuster Yu Zhang
... [+16 authors] ...,
Francesca Chiaromonte
Gerd A. Blobel
Mitchell J. Weiss
Ross C. Hardison

First Published July 27, 2011

Genome-wide identification of conserved regulatory function in diverged sequences

Leila Taher
David M. McGaughey
Samantha Maragh
Ivy Aneas
Seneca L. Bessling
Webb Miller
Marcelo A. Nobrega
Andrew S. McCallion
Ivan Ovcharenko

First Published May 31, 2011

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