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Method

Proteome-wide discovery of mislocated proteins in cancer

  • KiYoung Lee
  • Kyunghee Byun
  • Wonpyo Hong
  • Han-Yu Chuang
  • Chan-Gi Pack
  • Enkhjargal Bayarsaikhan Sun Ha Paek
  • ... [+2 authors] ...,
  • Hyosil Kim
  • Hye Young Shin
  • Trey Ideker
  • Bonghee Lee
  • First Published May 14, 2013
Research

Dynamics of the epigenetic landscape during erythroid differentiation after GATA1 restoration

  • Weisheng Wu
  • Yong Cheng
  • Cheryl A. Keller
  • Jason Ernst
  • Swathi Ashok Kumar
  • Tejaswini Mishra Christapher Morrissey Christine M. Dorman Kuan-Bei Chen Daniela Drautz Belinda Giardine Yoichiro Shibata Lingyun Song Max Pimkin Gregory E. Crawford Terrence S. Furey Manolis Kellis Webb Miller James Taylor Stephan C. Schuster Yu Zhang
  • ... [+16 authors] ...,
  • Francesca Chiaromonte
  • Gerd A. Blobel
  • Mitchell J. Weiss
  • Ross C. Hardison
  • First Published July 27, 2011
Method

Genome-wide identification of conserved regulatory function in diverged sequences

  • Leila Taher
  • David M. McGaughey
  • Samantha Maragh
  • Ivy Aneas
  • Seneca L. Bessling
  • Webb Miller
  • Marcelo A. Nobrega
  • Andrew S. McCallion
  • Ivan Ovcharenko
  • First Published May 31, 2011
Research

trans and cis mutations" > Coevolution within a transcriptional network by compensatory trans and cis mutations

  • Dwight Kuo
  • Katherine Licon
  • Sourav Bandyopadhyay
  • Ryan Chuang
  • Colin Luo
  • Justin Catalana
  • Timothy Ravasi
  • Kai Tan
  • Trey Ideker
  • First Published October 26, 2010
Letter

Bayesian network analysis of targeting interactions in chromatin

  • Bas van Steensel
  • Ulrich Braunschweig
  • Guillaume J. Filion
  • Menzies Chen
  • Joke G. van Bemmel
  • Trey Ideker
  • First Published December 9, 2009
Article

Erythroid GATA1 function revealed by genome-wide analysis of transcription factor occupancy, histone modifications, and mRNA expression

  • Yong Cheng
  • Weisheng Wu
  • Swathi Ashok Kumar
  • Duonan Yu
  • Wulan Deng
  • Tamara Tripic David C. King Kuan-Bei Chen Ying Zhang Daniela Drautz Belinda Giardine Stephan C. Schuster Webb Miller Francesca Chiaromonte
  • ... [+9 authors] ...,
  • Yu Zhang
  • Gerd A. Blobel
  • Mitchell J. Weiss
  • Ross C. Hardison
  • First Published November 3, 2009
Letter

Dynamic reprogramming of transcription factors to and from the subtelomere

  • H. Craig Mak
  • Lorraine Pillus
  • Trey Ideker
  • First Published April 16, 2009
LETTER

Thylacinus cynocephalus)" > The mitochondrial genome sequence of the Tasmanian tiger (Thylacinus cynocephalus)

  • Webb Miller
  • Daniela I. Drautz
  • Jan E. Janecka
  • Arthur M. Lesk
  • Aakrosh Ratan
  • Lynn P. Tomsho Mike Packard Yeting Zhang Lindsay R. McClellan Ji Qi Fangqing Zhao M. Thomas P. Gilbert Love Dalén Juan Luis Arsuaga Per G.P. Ericson Daniel H. Huson
  • ... [+11 authors] ...,
  • Kristofer M. Helgen
  • William J. Murphy
  • Anders Götherström
  • Stephan C. Schuster
  • First Published January 12, 2009
LETTER

Transcriptional enhancement by GATA1-occupied DNA segments is strongly associated with evolutionary constraint on the binding site motif

  • Yong Cheng
  • David C. King
  • Louis C. Dore
  • Xinmin Zhang
  • Yuepin Zhou
  • Ying Zhang Christine Dorman Demesew Abebe Swathi A. Kumar Francesca Chiaromonte
  • ... [+5 authors] ...,
  • Webb Miller
  • Roland D. Green
  • Mitchell J. Weiss
  • Ross C. Hardison
  • First Published September 25, 2008
RECOMB Special/Review

Protein networks in disease

  • Trey Ideker
  • Roded Sharan
  • First Published April 1, 2008
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