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Research

Multi-species analysis of inflammatory response elements reveals ancient and lineage-specific contributions of transposable elements to NF-kB binding

  • Liangxi Wang
  • Tiegh Taylor
  • Kumaragurubaran Rathnakumar
  • Nadiya Khyzha
  • Minggao Liang
  • Azad Alizada Laura F. Campitelli Sara E. Pour Zain M. Patel Lina Antounians Ian C. Tobias Huayun Hou Timothy R. Hughes
  • ... [+8 authors] ...,
  • Sushmita Roy
  • Jennifer A. Mitchell
  • Jason E. Fish
  • Michael D. Wilson
  • First Published June 6, 2025
Research

The human genome contains over a million autonomous exons

  • Nicholas Stepankiw
  • Ally W.H. Yang
  • Timothy R. Hughes
  • First Published November 9, 2023
Research

Binding specificities of human RNA-binding proteins toward structured and linear RNA sequences

  • Arttu Jolma
  • Jilin Zhang
  • Estefania Mondragón
  • Ekaterina Morgunova
  • Teemu Kivioja
  • Kaitlin U. Laverty Yimeng Yin Fangjie Zhu Gleb Bourenkov
  • ... [+4 authors] ...,
  • Quaid Morris
  • Timothy R. Hughes
  • Louis James Maher
  • Jussi Taipale
  • First Published July 23, 2020
Resource

Cannabis sativa identifies extensive rearrangements at the THC/CBD acid synthase loci" > A physical and genetic map of Cannabis sativa identifies extensive rearrangements at the THC/CBD acid synthase loci

  • Kaitlin U. Laverty
  • Jake M. Stout
  • Mitchell J. Sullivan
  • Hardik Shah
  • Navdeep Gill
  • Larry Holbrook Gintaras Deikus
  • ... [+2 authors] ...,
  • Robert Sebra
  • Timothy R. Hughes
  • Jonathan E. Page
  • Harm van Bakel
  • First Published November 8, 2018
Resource

Multiparameter functional diversity of human C2H2 zinc finger proteins

  • Frank W. Schmitges
  • Ernest Radovani
  • Hamed S. Najafabadi
  • Marjan Barazandeh
  • Laura F. Campitelli
  • Yimeng Yin Arttu Jolma Guoqing Zhong Hongbo Guo Tharsan Kanagalingam Wei F. Dai
  • ... [+6 authors] ...,
  • Jussi Taipale
  • Andrew Emili
  • Jack F. Greenblatt
  • Timothy R. Hughes
  • First Published November 16, 2016
Research

Identifying mRNA sequence elements for target recognition by human Argonaute proteins

  • Jingjing Li
  • TaeHyung Kim
  • Razvan Nutiu
  • Debashish Ray
  • Timothy R. Hughes
  • Zhaolei Zhang
  • First Published March 24, 2014
Method

A unified model for yeast transcript definition

  • Carl G. de Boer
  • Harm van Bakel
  • Kyle Tsui
  • Joyce Li
  • Quaid D. Morris
  • Corey Nislow
  • Jack F. Greenblatt
  • Timothy R. Hughes
  • First Published October 29, 2013
Method

CG methylated microarrays identify a novel methylated sequence bound by the CEBPB|ATF4 heterodimer that is active in vivo

  • Ishminder K. Mann
  • Raghunath Chatterjee
  • Jianfei Zhao
  • Ximiao He
  • Matthew T. Weirauch
  • Timothy R. Hughes
  • Charles Vinson
  • First Published April 16, 2013
Method

Multiplexed massively parallel SELEX for characterization of human transcription factor binding specificities

  • Arttu Jolma
  • Teemu Kivioja
  • Jarkko Toivonen
  • Lu Cheng
  • Gonghong Wei
  • Martin Enge Mikko Taipale Juan M. Vaquerizas Jian Yan Mikko J. Sillanpää Martin Bonke Kimmo Palin Shaheynoor Talukder
  • ... [+8 authors] ...,
  • Timothy R. Hughes
  • Nicholas M. Luscombe
  • Esko Ukkonen
  • Jussi Taipale
  • First Published April 8, 2010
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