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Resource

Improved definition of the mouse transcriptome via targeted RNA sequencing

  • Giovanni Bussotti
  • Tommaso Leonardi
  • Michael B. Clark
  • Tim R. Mercer
  • Joanna Crawford
  • Lorenzo Malquori
  • ... [+1 authors] ...,
  • Cedric Notredame
  • Marcel E. Dinger
  • John S. Mattick
  • Anton J. Enright
  • First Published May 2, 2016
Resource

Genome-wide discovery of human splicing branchpoints

  • Tim R. Mercer
  • Michael B. Clark
  • Stacey B. Andersen
  • Marion E. Brunck
  • Wilfried Haerty
  • Joanna Crawford
  • ... [+1 authors] ...,
  • Ryan J. Taft
  • Lars K. Nielsen
  • Marcel E. Dinger
  • John S. Mattick
  • First Published January 5, 2015
Perspective

Understanding the regulatory and transcriptional complexity of the genome through structure

  • Tim R. Mercer
  • John S. Mattick
  • First Published July 1, 2013
Research

Dynamics of the epigenetic landscape during erythroid differentiation after GATA1 restoration

  • Weisheng Wu
  • Yong Cheng
  • Cheryl A. Keller
  • Jason Ernst
  • Swathi Ashok Kumar
  • Tejaswini Mishra Christapher Morrissey Christine M. Dorman Kuan-Bei Chen Daniela Drautz Belinda Giardine Yoichiro Shibata Lingyun Song Max Pimkin Gregory E. Crawford Terrence S. Furey Manolis Kellis Webb Miller James Taylor Stephan C. Schuster Yu Zhang
  • ... [+16 authors] ...,
  • Francesca Chiaromonte
  • Gerd A. Blobel
  • Mitchell J. Weiss
  • Ross C. Hardison
  • First Published July 27, 2011
Method

Genome-wide identification of conserved regulatory function in diverged sequences

  • Leila Taher
  • David M. McGaughey
  • Samantha Maragh
  • Ivy Aneas
  • Seneca L. Bessling
  • Webb Miller
  • Marcelo A. Nobrega
  • Andrew S. McCallion
  • Ivan Ovcharenko
  • First Published May 31, 2011
Research

Regulated post-transcriptional RNA cleavage diversifies the eukaryotic transcriptome

  • Tim R. Mercer
  • Marcel E. Dinger
  • Cameron P. Bracken
  • Gabriel Kolle
  • Jan M. Szubert
  • Darren J. Korbie Marjan E. Askarian-Amiri
  • ... [+2 authors] ...,
  • Brooke B. Gardiner
  • Gregory J. Goodall
  • Sean M. Grimmond
  • John S. Mattick
  • First Published November 2, 2010
Article

Erythroid GATA1 function revealed by genome-wide analysis of transcription factor occupancy, histone modifications, and mRNA expression

  • Yong Cheng
  • Weisheng Wu
  • Swathi Ashok Kumar
  • Duonan Yu
  • Wulan Deng
  • Tamara Tripic David C. King Kuan-Bei Chen Ying Zhang Daniela Drautz Belinda Giardine Stephan C. Schuster Webb Miller Francesca Chiaromonte
  • ... [+9 authors] ...,
  • Yu Zhang
  • Gerd A. Blobel
  • Mitchell J. Weiss
  • Ross C. Hardison
  • First Published November 3, 2009
LETTER

Thylacinus cynocephalus)" > The mitochondrial genome sequence of the Tasmanian tiger (Thylacinus cynocephalus)

  • Webb Miller
  • Daniela I. Drautz
  • Jan E. Janecka
  • Arthur M. Lesk
  • Aakrosh Ratan
  • Lynn P. Tomsho Mike Packard Yeting Zhang Lindsay R. McClellan Ji Qi Fangqing Zhao M. Thomas P. Gilbert Love Dalén Juan Luis Arsuaga Per G.P. Ericson Daniel H. Huson
  • ... [+11 authors] ...,
  • Kristofer M. Helgen
  • William J. Murphy
  • Anders Götherström
  • Stephan C. Schuster
  • First Published January 12, 2009
LETTER

Transcriptional enhancement by GATA1-occupied DNA segments is strongly associated with evolutionary constraint on the binding site motif

  • Yong Cheng
  • David C. King
  • Louis C. Dore
  • Xinmin Zhang
  • Yuepin Zhou
  • Ying Zhang Christine Dorman Demesew Abebe Swathi A. Kumar Francesca Chiaromonte
  • ... [+5 authors] ...,
  • Webb Miller
  • Roland D. Green
  • Mitchell J. Weiss
  • Ross C. Hardison
  • First Published September 25, 2008
LETTER

Long noncoding RNAs in mouse embryonic stem cell pluripotency and differentiation

  • Marcel E. Dinger
  • Paulo P. Amaral
  • Tim R. Mercer
  • Ken C. Pang
  • Stephen J. Bruce
  • Brooke B. Gardiner Marjan E. Askarian-Amiri Kelin Ru Giulia Soldà Cas Simons Susan M. Sunkin
  • ... [+6 authors] ...,
  • Mark L. Crowe
  • Sean M. Grimmond
  • Andrew C. Perkins
  • John S. Mattick
  • First Published June 18, 2008
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