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A limited set of transcriptional programs define major cell types

  • Alessandra Breschi
  • Manuel Muñoz-Aguirre
  • Valentin Wucher
  • Carrie A. Davis
  • Diego Garrido-Martín
  • Sarah Djebali Jesse Gillis Dmitri D. Pervouchine Anna Vlasova Alexander Dobin Chris Zaleski Jorg Drenkow Cassidy Danyko Alexandra Scavelli
  • ... [+9 authors] ...,
  • Ferran Reverter
  • Michael P. Snyder
  • Thomas R. Gingeras
  • Roderic Guigó
  • First Published July 29, 2020

Dynamics of microRNA expression during mouse prenatal development

  • Sorena Rahmanian
  • Rabi Murad
  • Alessandra Breschi
  • Weihua Zeng
  • Mark Mackiewicz
  • Brian Williams Carrie A. Davis Brian Roberts Sarah Meadows Dianna Moore Diane Trout Chris Zaleski Alex Dobin Lei-Hoon Sei Jorg Drenkow Alex Scavelli Thomas R. Gingeras
  • ... [+12 authors] ...,
  • Barbara J. Wold
  • Richard M. Myers
  • Roderic Guigó
  • Ali Mortazavi
  • First Published October 23, 2019

Alu elements suggests cell-type–specific enhancer function" > Genome-wide analysis of polymerase III–transcribed Alu elements suggests cell-type–specific enhancer function

  • Xiao-Ou Zhang
  • Thomas R. Gingeras
  • Zhiping Weng
  • First Published August 14, 2019

Complete avian malaria parasite genomes reveal features associated with lineage-specific evolution in birds and mammals

  • Ulrike Böhme
  • Thomas D. Otto
  • James A. Cotton
  • Sascha Steinbiss
  • Mandy Sanders
  • Samuel O. Oyola Antoine Nicot Sylvain Gandon Kailash P. Patra Colin Herd Ellen Bushell Katarzyna K. Modrzynska Oliver Billker
  • ... [+8 authors] ...,
  • Joseph M. Vinetz
  • Ana Rivero
  • Chris I. Newbold
  • Matthew Berriman
  • First Published March 2, 2018

Quantitative insertion-site sequencing (QIseq) for high throughput phenotyping of transposon mutants

  • Iraad F. Bronner
  • Thomas D. Otto
  • Min Zhang
  • Kenneth Udenze
  • Chengqi Wang
  • Michael A. Quail
  • Rays H.Y. Jiang
  • John H. Adams
  • Julian C. Rayner
  • First Published May 10, 2016

Genomic analysis of the causative agents of coccidiosis in domestic chickens

  • Adam J. Reid
  • Damer P. Blake
  • Hifzur R. Ansari
  • Karen Billington
  • Hilary P. Browne
  • Josephine Bryant Matt Dunn Stacy S. Hung Fumiya Kawahara Diego Miranda-Saavedra Tareq B. Malas Tobias Mourier Hardeep Naghra Mridul Nair Thomas D. Otto Neil D. Rawlings Pierre Rivailler Alejandro Sanchez-Flores Mandy Sanders Chandra Subramaniam Yea-Ling Tay Yong Woo Xikun Wu Bart Barrell Paul H. Dear Christian Doerig Arthur Gruber Alasdair C. Ivens John Parkinson Marie-Adèle Rajandream Martin W. Shirley
  • ... [+26 authors] ...,
  • Kiew-Lian Wan
  • Matthew Berriman
  • Fiona M. Tomley
  • Arnab Pain
  • First Published July 11, 2014

De novo DNA demethylation and noncoding transcription define active intergenic regulatory elements

  • Felix Schlesinger
  • Andrew D. Smith
  • Thomas R. Gingeras
  • Gregory J. Hannon
  • Emily Hodges
  • First Published June 28, 2013

Understanding transcriptional regulation by integrative analysis of transcription factor binding data

  • Chao Cheng
  • Roger Alexander
  • Renqiang Min
  • Jing Leng
  • Kevin Y. Yip
  • Joel Rozowsky Koon-Kiu Yan Xianjun Dong Sarah Djebali Yijun Ruan Carrie A. Davis Piero Carninci Timo Lassman Thomas R. Gingeras Roderic Guigó
  • ... [+10 authors] ...,
  • Ewan Birney
  • Zhiping Weng
  • Michael Snyder
  • Mark Gerstein
  • First Published September 5, 2012

The GENCODE v7 catalog of human long noncoding RNAs: Analysis of their gene structure, evolution, and expression

  • Thomas Derrien
  • Rory Johnson
  • Giovanni Bussotti
  • Andrea Tanzer
  • Sarah Djebali
  • Hagen Tilgner Gregory Guernec David Martin Angelika Merkel David G. Knowles Julien Lagarde Lavanya Veeravalli Xiaoan Ruan Yijun Ruan Timo Lassmann Piero Carninci James B. Brown Leonard Lipovich Jose M. Gonzalez Mark Thomas Carrie A. Davis Ramin Shiekhattar Thomas R. Gingeras
  • ... [+18 authors] ...,
  • Tim J. Hubbard
  • Cedric Notredame
  • Jennifer Harrow
  • Roderic Guigó
  • First Published September 5, 2012

Deep sequencing of subcellular RNA fractions shows splicing to be predominantly co-transcriptional in the human genome but inefficient for lncRNAs

  • Hagen Tilgner
  • David G. Knowles
  • Rory Johnson
  • Carrie A. Davis
  • Sudipto Chakrabortty
  • Sarah Djebali
  • ... [+1 authors] ...,
  • João Curado
  • Michael Snyder
  • Thomas R. Gingeras
  • Roderic Guigó
  • First Published September 5, 2012
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