Research
3C sites in poly(A) RNA" > Nanopore direct RNA sequencing reveals METTL2A-mediated m3C sites in poly(A) RNA
- First Published October 30, 2025
Research
Positive selective sweeps of epigenetic mutations regulating specialized metabolites in plants
- First Published May 18, 2021
Research
Long-read sequencing for non-small-cell lung cancer genomes
- First Published September 4, 2020
Method
Metabolic labeling of RNA using multiple ribonucleoside analogs enables the simultaneous evaluation of RNA synthesis and degradation rates
- First Published August 25, 2020
Corrigendum
Plasmodium falciparum" > Corrigendum: Interactive transcriptome analysis of malaria patients and infecting Plasmodium falciparum
- First Published August 1, 2018
Research
Long terminal repeats power evolution of genes and gene expression programs in mammalian oocytes and zygotes
- First Published May 18, 2017
Research
A GC-rich sequence feature in the 3′ UTR directs UPF1-dependent mRNA decay in mammalian cells
- First Published December 9, 2016
Resource
Ciona intestinalis" > Genome-wide identification and characterization of transcription start sites and promoters in the tunicate Ciona intestinalis
- First Published December 14, 2015
Research
Plasmodium falciparum" > Interactive transcriptome analysis of malaria patients and infecting Plasmodium falciparum
- First Published August 4, 2014
Research
Variation in chromatin accessibility in human kidney cancer links H3K36 methyltransferase loss with widespread RNA processing defects
- First Published October 24, 2013
Resource
Coelacanth genomes reveal signatures for evolutionary transition from water to land
- First Published July 22, 2013
Research
DNase-seq predicts regions of rotational nucleosome stability across diverse human cell types
- First Published May 8, 2013
Research
Patterns of regulatory activity across diverse human cell types predict tissue identity, transcription factor binding, and long-range interactions
- First Published March 12, 2013
Research
High-resolution DNA methylome analysis of primordial germ cells identifies gender-specific reprogramming in mice
- First Published February 14, 2013
Research
Genome-wide genetic variations are highly correlated with proximal DNA methylation patterns
- First Published June 11, 2012
Method
Genome-wide determination of RNA stability reveals hundreds of short-lived noncoding transcripts in mammals
- First Published February 27, 2012
Research
Cell-type specific and combinatorial usage of diverse transcription factors revealed by genome-wide binding studies in multiple human cells
- First Published November 16, 2011
Method
Integrating genetic and gene expression evidence into genome-wide association analysis of gene sets
- First Published September 22, 2011
Research
Dynamics of the epigenetic landscape during erythroid differentiation after GATA1 restoration
- First Published July 27, 2011
Resource
Open chromatin defined by DNaseI and FAIRE identifies regulatory elements that shape cell-type identity
- First Published July 12, 2011
Resource
Genome-wide characterization of transcriptional start sites in humans by integrative transcriptome analysis
- First Published March 3, 2011
Research
Nucleotide composition-linked divergence of vertebrate core promoter architecture
- First Published January 10, 2011
Method
High-resolution genome-wide in vivo footprinting of diverse transcription factors in human cells
- First Published November 24, 2010
LETTER
Distinct class of putative “non-conserved” promoters in humans: Comparative studies of alternative promoters of human and mouse genes
- First Published June 13, 2007
LETTER
Toxoplasma gondii" > Common inheritance of chromosome Ia associated with clonal expansion of Toxoplasma gondii
- First Published August 10, 2006
LETTER
Diversification of transcriptional modulation: Large-scale identification and characterization of putative alternative promoters of human genes
- First Published December 12, 2005
LETTER
Analysis of Human mRNAs With the Reference Genome Sequence Reveals Potential Errors, Polymorphisms, and RNA Editing
- First Published October 15, 2004
LETTER
Analysis of Small Human Proteins Reveals the Translation of Upstream Open Reading Frames of mRNAs
- First Published October 15, 2004
LETTER
Sequence Comparison of Human and Mouse Genes Reveals a Homologous Block Structure in the Promoter Regions
- First Published September 1, 2004
ARTICLE
Comparative Recombination Rates in the Rat, Mouse, and Human Genomes
- First Published April 1, 2004
RESOURCE
Fugu ESTs: New Resources for Transcription Analysis and Genome Annotation" > Fugu ESTs: New Resources for Transcription Analysis and Genome Annotation
- First Published January 1, 2003
ARTICLE
Covariation in Frequencies of Substitution, Deletion, Transposition, and Recombination During Eutherian Evolution
- First Published January 1, 2003
REPORT
Identification and Characterization of the Potential Promoter Regions of 1031 Kinds of Human Genes
- First Published April 11, 2001
