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Method

Combining DNA and protein alignments to improve genome annotation with LiftOn

  • First Published December 27, 2024
Method

Effects of transcriptional noise on estimates of gene and transcript expression in RNA sequencing experiments

  • First Published December 23, 2020
Research

Human contamination in bacterial genomes has created thousands of spurious proteins

  • First Published May 7, 2019
Method

Aegilops tauschii, a progenitor of bread wheat, with the MaSuRCA mega-reads algorithm" > Hybrid assembly of the large and highly repetitive genome of Aegilops tauschii, a progenitor of bread wheat, with the MaSuRCA mega-reads algorithm

  • First Published January 27, 2017
Method

Centrifuge: rapid and sensitive classification of metagenomic sequences

  • First Published October 17, 2016
Resource

Genome-wide annotation of microRNA primary transcript structures reveals novel regulatory mechanisms

  • First Published August 19, 2015
Resource

GAGE: A critical evaluation of genome assemblies and assembly algorithms

  • First Published December 6, 2011
Perspective

Assembly of large genomes using second-generation sequencing

  • First Published May 27, 2010
Methods

Computational Gene Prediction Using Multiple Sources of Evidence

  • First Published January 5, 2004
Methods

Hierarchical Scaffolding With Bambus

  • First Published January 5, 2004
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