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Resource

Haplotype-resolved 3D chromatin architecture of the hybrid pig

  • Yu Lin
  • Jing Li
  • Yiren Gu
  • Long Jin
  • Jingyi Bai
  • Jiaman Zhang Yujie Wang Pengliang Liu Keren Long Mengnan He Diyan Li Can Liu Ziyin Han Yu Zhang Xiaokai Li Bo Zeng Lu Lu Fanli Kong Ying Sun Yongliang Fan Xun Wang Tao Wang An'an Jiang Jideng Ma Linyuan Shen Li Zhu Yanzhi Jiang Guoqing Tang Xiaolan Fan Qingyou Liu Hua Li Jinyong Wang Li Chen
  • ... [+28 authors] ...,
  • Liangpeng Ge
  • Xuewei Li
  • Qianzi Tang
  • Mingzhou Li
  • First Published March 13, 2024
Research

Plasma cell-free RNA characteristics in COVID-19 patients

  • Yanqun Wang
  • Jie Li
  • Lu Zhang
  • Hai-Xi Sun
  • Zhaoyong Zhang
  • Jinjin Xu Yonghao Xu Yu Lin Airu Zhu Yuxue Luo Haibo Zhou Yan Wu Shanwen Lin Yuzhe Sun Fei Xiao Ruiying Chen Liyan Wen Wei Chen Fang Li Rijing Ou Yanjun Zhang Tingyou Kuo Yuming Li Lingguo Li Jing Sun Kun Sun Zhen Zhuang Haorong Lu Zhao Chen Guoqiang Mai Jianfen Zhuo Puyi Qian Jiayu Chen Huanming Yang Jian Wang Xun Xu Nanshan Zhong
  • ... [+32 authors] ...,
  • Jingxian Zhao
  • Junhua Li
  • Jincun Zhao
  • Xin Jin
  • First Published January 21, 2022
Method

Detection and analysis of ancient segmental duplications in mammalian genomes

  • Lianrong Pu
  • Yu Lin
  • Pavel A. Pevzner
  • First Published May 7, 2018
Resource

Comprehensive variation discovery and recovery of missing sequence in the pig genome using multiple de novo assemblies

  • Mingzhou Li
  • Lei Chen
  • Shilin Tian
  • Yu Lin
  • Qianzi Tang
  • Xuming Zhou Diyan Li Carol K.L. Yeung Tiandong Che Long Jin Yuhua Fu Jideng Ma Xun Wang Anan Jiang Jing Lan Qi Pan Yingkai Liu Zonggang Luo Zongyi Guo Haifeng Liu Li Zhu Surong Shuai Guoqing Tang Jiugang Zhao Yanzhi Jiang Lin Bai Shunhua Zhang Miaomiao Mai Changchun Li Dawei Wang Yiren Gu Guosong Wang Hongfeng Lu Yan Li Haihao Zhu Zongwen Li Ming Li Vadim N. Gladyshev Zhi Jiang
  • ... [+34 authors] ...,
  • Shuhong Zhao
  • Jinyong Wang
  • Ruiqiang Li
  • Xuewei Li
  • First Published September 19, 2016
Method

Read clouds uncover variation in complex regions of the human genome

  • Alex Bishara
  • Yuling Liu
  • Ziming Weng
  • Dorna Kashef-Haghighi
  • Daniel E. Newburger
  • Robert West
  • Arend Sidow
  • Serafim Batzoglou
  • First Published August 18, 2015
Method

Parente2: a fast and accurate method for detecting identity by descent

  • Jesse M. Rodriguez
  • Sivan Bercovici
  • Lin Huang
  • Roy Frostig
  • Serafim Batzoglou
  • First Published October 1, 2014
Research

Genome evolution during progression to breast cancer

  • Daniel E. Newburger
  • Dorna Kashef-Haghighi
  • Ziming Weng
  • Raheleh Salari
  • Robert T. Sweeney
  • Alayne L. Brunner Shirley X. Zhu Xiangqian Guo Sushama Varma
  • ... [+4 authors] ...,
  • Megan L. Troxell
  • Robert B. West
  • Serafim Batzoglou
  • Arend Sidow
  • First Published April 8, 2013
Method

Ubiquitous heterogeneity and asymmetry of the chromatin environment at regulatory elements

  • Anshul Kundaje
  • Sofia Kyriazopoulou-Panagiotopoulou
  • Max Libbrecht
  • Cheryl L. Smith
  • Debasish Raha
  • Elliott E. Winters
  • ... [+1 authors] ...,
  • Steven M. Johnson
  • Michael Snyder
  • Serafim Batzoglou
  • Arend Sidow
  • First Published September 5, 2012
Resource

ChIP-seq guidelines and practices of the ENCODE and modENCODE consortia

  • Stephen G. Landt
  • Georgi K. Marinov
  • Anshul Kundaje
  • Pouya Kheradpour
  • Florencia Pauli
  • Serafim Batzoglou Bradley E. Bernstein Peter Bickel James B. Brown Philip Cayting Yiwen Chen Gilberto DeSalvo Charles Epstein Katherine I. Fisher-Aylor Ghia Euskirchen Mark Gerstein Jason Gertz Alexander J. Hartemink Michael M. Hoffman Vishwanath R. Iyer Youngsook L. Jung Subhradip Karmakar Manolis Kellis Peter V. Kharchenko Qunhua Li Tao Liu X. Shirley Liu Lijia Ma Aleksandar Milosavljevic Richard M. Myers Peter J. Park Michael J. Pazin Marc D. Perry Debasish Raha Timothy E. Reddy Joel Rozowsky Noam Shoresh Arend Sidow Matthew Slattery John A. Stamatoyannopoulos Michael Y. Tolstorukov Kevin P. White Simon Xi
  • ... [+38 authors] ...,
  • Peggy J. Farnham
  • Jason D. Lieb
  • Barbara J. Wold
  • Michael Snyder
  • First Published September 5, 2012
Method

Linking disease associations with regulatory information in the human genome

  • Marc A. Schaub
  • Alan P. Boyle
  • Anshul Kundaje
  • Serafim Batzoglou
  • Michael Snyder
  • First Published September 5, 2012
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