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Improved definition of the mouse transcriptome via targeted RNA sequencing

Giovanni Bussotti
Tommaso Leonardi
Michael B. Clark
Tim R. Mercer
Joanna Crawford
Lorenzo Malquori
... [+1 authors] ...,
Cedric Notredame
Marcel E. Dinger
John S. Mattick
Anton J. Enright

First Published May 2, 2016

Read clouds uncover variation in complex regions of the human genome

Alex Bishara
Yuling Liu
Ziming Weng
Dorna Kashef-Haghighi
Daniel E. Newburger
Robert West
Arend Sidow
Serafim Batzoglou

First Published August 18, 2015

Genome-wide discovery of human splicing branchpoints

Tim R. Mercer
Michael B. Clark
Stacey B. Andersen
Marion E. Brunck
Wilfried Haerty
Joanna Crawford
... [+1 authors] ...,
Ryan J. Taft
Lars K. Nielsen
Marcel E. Dinger
John S. Mattick

First Published January 5, 2015

Parente2: a fast and accurate method for detecting identity by descent

Jesse M. Rodriguez
Sivan Bercovici
Lin Huang
Roy Frostig
Serafim Batzoglou

First Published October 1, 2014

Understanding the regulatory and transcriptional complexity of the genome through structure

Tim R. Mercer
John S. Mattick

First Published July 1, 2013

Genome evolution during progression to breast cancer

Daniel E. Newburger
Dorna Kashef-Haghighi
Ziming Weng
Raheleh Salari
Robert T. Sweeney
Alayne L. Brunner Shirley X. Zhu Xiangqian Guo Sushama Varma
... [+4 authors] ...,
Megan L. Troxell
Robert B. West
Serafim Batzoglou
Arend Sidow

First Published April 8, 2013

Ubiquitous heterogeneity and asymmetry of the chromatin environment at regulatory elements

Anshul Kundaje
Sofia Kyriazopoulou-Panagiotopoulou
Max Libbrecht
Cheryl L. Smith
Debasish Raha
Elliott E. Winters
... [+1 authors] ...,
Steven M. Johnson
Michael Snyder
Serafim Batzoglou
Arend Sidow

First Published September 5, 2012

Linking disease associations with regulatory information in the human genome

Marc A. Schaub
Alan P. Boyle
Anshul Kundaje
Serafim Batzoglou
Michael Snyder

First Published September 5, 2012

ChIP-seq guidelines and practices of the ENCODE and modENCODE consortia

Stephen G. Landt
Georgi K. Marinov
Anshul Kundaje
Pouya Kheradpour
Florencia Pauli
Serafim Batzoglou Bradley E. Bernstein Peter Bickel James B. Brown Philip Cayting Yiwen Chen Gilberto DeSalvo Charles Epstein Katherine I. Fisher-Aylor Ghia Euskirchen Mark Gerstein Jason Gertz Alexander J. Hartemink Michael M. Hoffman Vishwanath R. Iyer Youngsook L. Jung Subhradip Karmakar Manolis Kellis Peter V. Kharchenko Qunhua Li Tao Liu X. Shirley Liu Lijia Ma Aleksandar Milosavljevic Richard M. Myers Peter J. Park Michael J. Pazin Marc D. Perry Debasish Raha Timothy E. Reddy Joel Rozowsky Noam Shoresh Arend Sidow Matthew Slattery John A. Stamatoyannopoulos Michael Y. Tolstorukov Kevin P. White Simon Xi
... [+38 authors] ...,
Peggy J. Farnham
Jason D. Lieb
Barbara J. Wold
Michael Snyder

First Published September 5, 2012

Regulated post-transcriptional RNA cleavage diversifies the eukaryotic transcriptome

Tim R. Mercer
Marcel E. Dinger
Cameron P. Bracken
Gabriel Kolle
Jan M. Szubert
Darren J. Korbie Marjan E. Askarian-Amiri
... [+2 authors] ...,
Brooke B. Gardiner
Gregory J. Goodall
Sean M. Grimmond
John S. Mattick

First Published November 2, 2010

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