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Methods

Sequence and structural variation in a human genome uncovered by short-read, massively parallel ligation sequencing using two-base encoding

Kevin Judd McKernan
Heather E. Peckham
Gina L. Costa
Stephen F. McLaughlin
Yutao Fu
Eric F. Tsung Christopher R. Clouser Cisyla Duncan Jeffrey K. Ichikawa Clarence C. Lee Zheng Zhang Swati S. Ranade Eileen T. Dimalanta Fiona C. Hyland Tanya D. Sokolsky Lei Zhang Andrew Sheridan Haoning Fu Cynthia L. Hendrickson Bin Li Lev Kotler Jeremy R. Stuart Joel A. Malek Jonathan M. Manning Alena A. Antipova Damon S. Perez Michael P. Moore Kathleen C. Hayashibara Michael R. Lyons Robert E. Beaudoin Brittany E. Coleman Michael W. Laptewicz Adam E. Sannicandro Michael D. Rhodes Rajesh K. Gottimukkala Shan Yang Vineet Bafna Ali Bashir Andrew MacBride Can Alkan Jeffrey M. Kidd
... [+36 authors] ...,
Evan E. Eichler
Martin G. Reese
Francisco M. De La Vega
Alan P. Blanchard

First Published June 22, 2009

LETTER

Comparative analysis of chicken chromosome 28 provides new clues to the evolutionary fragility of gene-rich vertebrate regions

Laurie Gordon
Shan Yang
Mary Tran-Gyamfi
Dan Baggott
Mari Christensen
Aaron Hamilton Richard Crooijmans
... [+2 authors] ...,
Martien Groenen
Susan Lucas
Ivan Ovcharenko
Lisa Stubbs

First Published October 5, 2007

LETTER

The portability of tagSNPs across populations: A worldwide survey

Anna González-Neira
Xiayi Ke
Oscar Lao
Francesc Calafell
Arcadi Navarro
David Comas Howard Cann Suzannah Bumpstead Jilur Ghori Sarah Hunt
... [+5 authors] ...,
Panos Deloukas
Ian Dunham
Lon R. Cardon
Jaume Bertranpetit

First Published February 8, 2006

LETTER

Genetically indistinguishable SNPs and their influence on inferring the location of disease-associated variants

Robert Lawrence
David M. Evans
Andrew P. Morris
Xiayi Ke
Sarah Hunt
Marta Paolucci
... [+1 authors] ...,
Jiannis Ragoussis
Panos Deloukas
David Bentley
Lon R. Cardon

First Published October 26, 2005

RESOURCE

Complete MHC Haplotype Sequencing for Common Disease Gene Mapping

C. Andrew Stewart
Roger Horton
Richard J.N. Allcock
Jennifer L. Ashurst
Alexey M. Atrazhev
Penny Coggill Ian Dunham Simon Forbes Karen Halls Joanna M.M. Howson Sean J. Humphray Sarah Hunt Andrew J. Mungall Kazutoyo Osoegawa Sophie Palmer Anne N. Roberts Jane Rogers Sarah Sims Yu Wang Laurens G. Wilming John F. Elliott Pieter J. de Jong
... [+17 authors] ...,
Stephen Sawcer
John A. Todd
John Trowsdale
Stephan Beck

First Published May 12, 2004

LETTER

Insertions and Deletions Are Male Biased Too: A Whole-Genome Analysis in Rodents

Kateryna D. Makova
Shan Yang
Francesca Chiaromonte

First Published April 1, 2004

ARTICLE

Patterns of Insertions and Their Covariation With Substitutions in the Rat, Mouse, and Human Genomes

Shan Yang
Arian F. Smit
Scott Schwartz
Francesca Chiaromonte
Krishna M. Roskin
David Haussler
Webb Miller
Ross C. Hardison

First Published April 1, 2004

RESOURCE

A Whole-Genome Mouse BAC Microarray With 1-Mb Resolution for Analysis of DNA Copy Number Changes by Array Comparative Genomic Hybridization

Yeun-Jun Chung
Jos Jonkers
Hannah Kitson
Heike Fiegler
Sean Humphray
Carol Scott Sarah Hunt Yuejin Yu Ichiko Nishijima
... [+4 authors] ...,
Arno Velds
Henne Holstege
Nigel Carter
Allan Bradley

First Published January 5, 2004

LETTER

Distinguishing Regulatory DNA From Neutral Sites

Laura Elnitski
Ross C. Hardison
Jia Li
Shan Yang
Diana Kolbe
Pallavi Eswara
... [+1 authors] ...,
Michael J. O'Connor
Scott Schwartz
Webb Miller
Francesca Chiaromonte

First Published January 1, 2003

ARTICLE

Covariation in Frequencies of Substitution, Deletion, Transposition, and Recombination During Eutherian Evolution

Ross C. Hardison
Krishna M. Roskin
Shan Yang
Mark Diekhans
W. James Kent
Ryan Weber Laura Elnitski Jia Li Michael O'Connor Diana Kolbe Scott Schwartz Terrence S. Furey Simon Whelan Nick Goldman
... [+9 authors] ...,
Arian Smit
Webb Miller
Francesca Chiaromonte
David Haussler

First Published January 1, 2003

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