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Method

Laboratory validation of a clinical metagenomic sequencing assay for pathogen detection in cerebrospinal fluid

  • Steve Miller
  • Samia N. Naccache
  • Erik Samayoa
  • Kevin Messacar
  • Shaun Arevalo
  • Scot Federman Doug Stryke Elizabeth Pham Becky Fung William J. Bolosky Danielle Ingebrigtsen Walter Lorizio Sandra M. Paff John A. Leake
  • ... [+9 authors] ...,
  • Rick Pesano
  • Roberta DeBiasi
  • Samuel Dominguez
  • Charles Y. Chiu
  • First Published April 16, 2019
Resource

Comprehensive variation discovery and recovery of missing sequence in the pig genome using multiple de novo assemblies

  • Mingzhou Li
  • Lei Chen
  • Shilin Tian
  • Yu Lin
  • Qianzi Tang
  • Xuming Zhou Diyan Li Carol K.L. Yeung Tiandong Che Long Jin Yuhua Fu Jideng Ma Xun Wang Anan Jiang Jing Lan Qi Pan Yingkai Liu Zonggang Luo Zongyi Guo Haifeng Liu Li Zhu Surong Shuai Guoqing Tang Jiugang Zhao Yanzhi Jiang Lin Bai Shunhua Zhang Miaomiao Mai Changchun Li Dawei Wang Yiren Gu Guosong Wang Hongfeng Lu Yan Li Haihao Zhu Zongwen Li Ming Li Vadim N. Gladyshev Zhi Jiang
  • ... [+34 authors] ...,
  • Shuhong Zhao
  • Jinyong Wang
  • Ruiqiang Li
  • Xuewei Li
  • First Published September 19, 2016
Resource

A cloud-compatible bioinformatics pipeline for ultrarapid pathogen identification from next-generation sequencing of clinical samples

  • Samia N. Naccache
  • Scot Federman
  • Narayanan Veeraraghavan
  • Matei Zaharia
  • Deanna Lee
  • Erik Samayoa Jerome Bouquet Alexander L. Greninger Ka-Cheung Luk Barryett Enge Debra A. Wadford Sharon L. Messenger Gillian L. Genrich Kristen Pellegrino Gilda Grard Eric Leroy Bradley S. Schneider Joseph N. Fair Miguel A. Martínez Pavel Isa John A. Crump Joseph L. DeRisi
  • ... [+17 authors] ...,
  • Taylor Sittler
  • John Hackett
  • Steve Miller
  • Charles Y. Chiu
  • First Published June 4, 2014
Resource

SOAPindel: Efficient identification of indels from short paired reads

  • Shengting Li
  • Ruiqiang Li
  • Heng Li
  • Jianliang Lu
  • Yingrui Li
  • Lars Bolund
  • Mikkel H. Schierup
  • Jun Wang
  • First Published September 12, 2012
Research

Mycosphaerella graminicola and its wild sister species" > The making of a new pathogen: Insights from comparative population genomics of the domesticated wheat pathogen Mycosphaerella graminicola and its wild sister species

  • Eva H. Stukenbrock
  • Thomas Bataillon
  • Julien Y. Dutheil
  • Troels T. Hansen
  • Ruiqiang Li
  • Marcello Zala
  • Bruce A. McDonald
  • Jun Wang
  • Mikkel H. Schierup
  • First Published October 12, 2011
Research

Deep RNA sequencing at single base-pair resolution reveals high complexity of the rice transcriptome

  • Guojie Zhang
  • Guangwu Guo
  • Xueda Hu
  • Yong Zhang
  • Qiye Li
  • Ruiqiang Li Ruhong Zhuang Zhike Lu Zengquan He Xiaodong Fang Li Chen Wei Tian Yong Tao Karsten Kristiansen Xiuqing Zhang
  • ... [+10 authors] ...,
  • Songgang Li
  • Huanming Yang
  • Jian Wang
  • Jun Wang
  • First Published March 19, 2010
Resource

De novo assembly of human genomes with massively parallel short read sequencing

  • Ruiqiang Li
  • Hongmei Zhu
  • Jue Ruan
  • Wubin Qian
  • Xiaodong Fang
  • Zhongbin Shi Yingrui Li Shengting Li Gao Shan Karsten Kristiansen
  • ... [+5 authors] ...,
  • Songgang Li
  • Huanming Yang
  • Jian Wang
  • Jun Wang
  • First Published December 17, 2009
Resource

SNP detection for massively parallel whole-genome resequencing

  • Ruiqiang Li
  • Yingrui Li
  • Xiaodong Fang
  • Huanming Yang
  • Jian Wang
  • Karsten Kristiansen
  • Jun Wang
  • First Published May 6, 2009
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