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Research

Integrating short-read and long-read single-cell RNA sequencing for comprehensive transcriptome profiling in mouse retina

  • Meng Wang
  • Yumei Li
  • Jun Wang
  • Soo Hwan Oh
  • Yexuan Cao
  • Rui Chen
  • First Published March 6, 2025
Method

A deconvolution framework that uses single-cell sequencing plus a small benchmark data set for accurate analysis of cell type ratios in complex tissue samples

  • Shuai Guo
  • Xiaoqian Liu
  • Xuesen Cheng
  • Yujie Jiang
  • Shuangxi Ji
  • Qingnan Liang Andrew Koval Yumei Li Leah A. Owen Ivana K. Kim Ana Aparicio Sanghoon Lee Anil K. Sood Scott Kopetz John Paul Shen
  • ... [+10 authors] ...,
  • John N. Weinstein
  • Margaret M. DeAngelis
  • Rui Chen
  • Wenyi Wang
  • First Published November 25, 2024
Research

Macaca mulatta) based on whole-genome sequences" > The population genomics of rhesus macaques (Macaca mulatta) based on whole-genome sequences

  • Cheng Xue
  • Muthuswamy Raveendran
  • R. Alan Harris
  • Gloria L. Fawcett
  • Xiaoming Liu
  • Simon White Mahmoud Dahdouli David Rio Deiros Jennifer E. Below William Salerno Laura Cox Guoping Fan Betsy Ferguson Julie Horvath Zach Johnson Sree Kanthaswamy H. Michael Kubisch Dahai Liu Michael Platt David G. Smith Binghua Sun Eric J. Vallender Feng Wang Roger W. Wiseman Rui Chen
  • ... [+20 authors] ...,
  • Donna M. Muzny
  • Richard A. Gibbs
  • Fuli Yu
  • Jeffrey Rogers
  • First Published October 17, 2016
Method

Integrative subcellular proteomic analysis allows accurate prediction of human disease-causing genes

  • Li Zhao
  • Yiyun Chen
  • Amol Onkar Bajaj
  • Aiden Eblimit
  • Mingchu Xu
  • Zachry T. Soens Feng Wang Zhongqi Ge Sung Yun Jung Feng He
  • ... [+5 authors] ...,
  • Yumei Li
  • Theodore G. Wensel
  • Jun Qin
  • Rui Chen
  • First Published February 24, 2016
Method

Drosophila melanogaster" > Large-scale identification of chemically induced mutations in Drosophila melanogaster

  • Nele A. Haelterman
  • Lichun Jiang
  • Yumei Li
  • Vafa Bayat
  • Hector Sandoval
  • Berrak Ugur Kai Li Tan Ke Zhang Danqing Bei Bo Xiong Wu-Lin Charng Theodore Busby Adeel Jawaid Gabriela David Manish Jaiswal
  • ... [+10 authors] ...,
  • Koen J.T. Venken
  • Shinya Yamamoto
  • Rui Chen
  • Hugo J. Bellen
  • First Published September 25, 2014
Research

Nucleosome fragility reveals novel functional states of chromatin and poises genes for activation

  • Yuanxin Xi
  • Jianhui Yao
  • Rui Chen
  • Wei Li
  • Xiangwei He
  • First Published March 1, 2011
Resource

Drosophila melanogaster transcriptome by paired-end RNA sequencing" > The Drosophila melanogaster transcriptome by paired-end RNA sequencing

  • Bryce Daines
  • Hui Wang
  • Liguo Wang
  • Yumei Li
  • Yi Han
  • David Emmert William Gelbart
  • ... [+2 authors] ...,
  • Xia Wang
  • Wei Li
  • Richard Gibbs
  • Rui Chen
  • First Published December 22, 2010
Method

Drosophila melanogaster using genomic capture sequencing" > Rapid identification of heterozygous mutations in Drosophila melanogaster using genomic capture sequencing

  • Hui Wang
  • Abanti Chattopadhyay
  • Zhe Li
  • Bryce Daines
  • Yumei Li
  • Chunxu Gao
  • Richard Gibbs
  • Kun Zhang
  • Rui Chen
  • First Published May 14, 2010
ARTICLE

Drosophila retinal determination protein Eyeless" > Genome-wide identification of direct targets of the Drosophila retinal determination protein Eyeless

  • Edwin J. Ostrin
  • Yumei Li
  • Kristi Hoffman
  • Jing Liu
  • Keqing Wang
  • Li Zhang
  • Graeme Mardon
  • Rui Chen
  • First Published March 13, 2006
ARTICLE

Drosophila pseudoobscura: Chromosomal, gene, and cis-element evolution" > Comparative genome sequencing of Drosophila pseudoobscura: Chromosomal, gene, and cis-element evolution

  • Stephen Richards
  • Yue Liu
  • Brian R. Bettencourt
  • Pavel Hradecky
  • Stan Letovsky
  • Rasmus Nielsen Kevin Thornton Melissa J. Hubisz Rui Chen Richard P. Meisel Olivier Couronne Sujun Hua Mark A. Smith Peili Zhang Jing Liu Harmen J. Bussemaker Marinus F. van Batenburg Sally L. Howells Steven E. Scherer Erica Sodergren Beverly B. Matthews Madeline A. Crosby Andrew J. Schroeder Daniel Ortiz-Barrientos Catharine M. Rives Michael L. Metzker Donna M. Muzny Graham Scott David Steffen David A. Wheeler Kim C. Worley Paul Havlak K. James Durbin Amy Egan Rachel Gill Jennifer Hume Margaret B. Morgan George Miner Cerissa Hamilton Yanmei Huang Lenée Waldron Daniel Verduzco Kerstin P. Clerc-Blankenburg Inna Dubchak Mohamed A.F. Noor Wyatt Anderson Kevin P. White Andrew G. Clark
  • ... [+43 authors] ...,
  • Stephen W. Schaeffer
  • William Gelbart
  • George M. Weinstock
  • Richard A. Gibbs
  • First Published January 3, 2005
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