Method
Secure phasing of private genomes in a trusted execution environment with TX-Phase
- First Published November 12, 2025
Method
Genotyping of selected germline adaptive immune system loci using short-read sequencing data
- First Published August 5, 2025
Method
Single-cell methylation sequencing data reveal succinct metastatic migration histories and tumor progression models
- First Published June 14, 2023
Method
An efficient genotyper and star-allele caller for pharmacogenomics
- First Published January 19, 2023
Research
Enhancers with tissue-specific activity are enriched in intronic regions
- First Published July 21, 2021
Corrigendum
Corrigendum: Functional annotation of human long noncoding RNAs via molecular phenotyping
- First Published September 14, 2020
Resource
A limited set of transcriptional programs define major cell types
- First Published July 29, 2020
Resource
Functional annotation of human long noncoding RNAs via molecular phenotyping
- First Published July 27, 2020
Resource
Dynamics of microRNA expression during mouse prenatal development
- First Published October 23, 2019
Method
PhISCS: a combinatorial approach for subperfect tumor phylogeny reconstruction via integrative use of single-cell and bulk sequencing data
- First Published October 18, 2019
Research
Drosophila regeneration" > Damage-responsive elements in Drosophila regeneration
- First Published November 20, 2018
Method
HIT'nDRIVE: patient-specific multidriver gene prioritization for precision oncology
- First Published July 18, 2017
Research
Evolution of selenophosphate synthetases: emergence and relocation of function through independent duplications and recurrent subfunctionalization
- First Published July 20, 2015
Research
Transcriptome characterization by RNA sequencing identifies a major molecular and clinical subdivision in chronic lymphocytic leukemia
- First Published November 21, 2013
Method
Combining RT-PCR-seq and RNA-seq to catalog all genic elements encoded in the human genome
- First Published September 5, 2012
Resource
GENCODE: The reference human genome annotation for The ENCODE Project
- First Published September 5, 2012
Research
Understanding transcriptional regulation by integrative analysis of transcription factor binding data
- First Published September 5, 2012
Resource
The GENCODE v7 catalog of human long noncoding RNAs: Analysis of their gene structure, evolution, and expression
- First Published September 5, 2012
Research
Deep sequencing of subcellular RNA fractions shows splicing to be predominantly co-transcriptional in the human genome but inefficient for lncRNAs
- First Published September 5, 2012
Method
nFuse: Discovery of complex genomic rearrangements in cancer using high-throughput sequencing
- First Published June 28, 2012
Method
Estimation of alternative splicing variability in human populations
- First Published November 23, 2011
Resource
Simultaneous structural variation discovery among multiple paired-end sequenced genomes
- First Published November 2, 2011
Research
Alu repeat discovery and characterization within human genomes" > Alu repeat discovery and characterization within human genomes
- First Published December 3, 2010
Methods
Combinatorial algorithms for structural variation detection in high-throughput sequenced genomes
- First Published May 15, 2009
LETTER
Structured RNAs in the ENCODE selected regions of the human genome
- First Published June 13, 2007
ARTICLE
The DART classification of unannotated transcription within the ENCODE regions: Associating transcription with known and novel loci
- First Published June 13, 2007
ARTICLE
Prominent use of distal 5′ transcription start sites and discovery of a large number of additional exons in ENCODE regions
- First Published June 13, 2007
LETTER
Tandem chimerism as a means to increase protein complexity in the human genome
- First Published December 12, 2005
Chicken Special/Letters
Comparison of splice sites in mammals and chicken
- First Published December 8, 2004
LETTER
Comparative Analysis of Amino Acid Repeats in Rodents and Humans
- First Published April 1, 2004
LETTER
Analysis of Primate Genomic Variation Reveals a Repeat-Driven Expansion of the Human Genome
- First Published March 1, 2003
METHODS
SGP-1: Prediction and Validation of Homologous Genes Based on Sequence Alignments
- First Published September 1, 2001
LETTER
Kua, a Newly Identified Gene" > Fusion of the Human Gene for the Polyubiquitination Coeffector UEV1 with Kua, a Newly Identified Gene
- First Published November 8, 2000
METHODS
An Assessment of Gene Prediction Accuracy in Large DNA Sequences
- First Published October 1, 2000
