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TFcomb identifies transcription factor combinations for cellular reprogramming based on single-cell multiomics data

  • Chen Li
  • Sijie Chen
  • Yixin Chen
  • Haiyang Bian
  • Minsheng Hao
  • Lei Wei
  • Xuegong Zhang
  • First Published April 10, 2025

Drosophila and C. elegans transcription factors reveal tissue-specific regulatory relationships" > Binding profiles for 961 Drosophila and C. elegans transcription factors reveal tissue-specific regulatory relationships

  • Michelle Kudron
  • Louis Gevirtzman
  • Alec Victorsen
  • Bridget C. Lear
  • Jiahao Gao
  • Jinrui Xu Swapna Samanta Emily Frink Adri Tran-Pearson Chau Huynh Dionne Vafeados Ann Hammonds William Fisher Martha Wall Greg Wesseling Vanessa Hernandez Zhichun Lin Mary Kasparian Kevin White Ravi Allada Mark Gerstein
  • ... [+16 authors] ...,
  • LaDeana Hillier
  • Susan E. Celniker
  • Valerie Reinke
  • Robert H. Waterston
  • First Published October 22, 2024

Latent feature extraction with a prior-based self-attention framework for spatial transcriptomics

  • Zhen Li
  • Xiaoyang Chen
  • Xuegong Zhang
  • Rui Jiang
  • Shengquan Chen
  • First Published October 30, 2023

ESICCC as a systematic computational framework for evaluation, selection, and integration of cell-cell communication inference methods

  • Jiaxin Luo
  • Minghua Deng
  • Xuegong Zhang
  • Xiaoqiang Sun
  • First Published October 12, 2023

Caenorhabditis elegans nematodes" > Comprehensive characterization of tissue-specific chromatin accessibility in L2 Caenorhabditis elegans nematodes

  • Timothy J. Durham
  • Riza M. Daza
  • Louis Gevirtzman
  • Darren A. Cusanovich
  • Olubusayo Bolonduro
  • William Stafford Noble
  • Jay Shendure
  • Robert H. Waterston
  • First Published April 22, 2021

C. elegans embryonic transcriptome with tissue, time, and alternative splicing resolution" > The C. elegans embryonic transcriptome with tissue, time, and alternative splicing resolution

  • Adam D. Warner
  • Louis Gevirtzman
  • LaDeana W. Hillier
  • Brent Ewing
  • Robert H. Waterston
  • First Published May 23, 2019

John Sulston (1942–2018)

  • Robert H. Waterston
  • First Published June 1, 2018

C. elegans" > The time-resolved transcriptome of C. elegans

  • Max E. Boeck
  • Chau Huynh
  • Lou Gevirtzman
  • Owen A. Thompson
  • Guilin Wang
  • Dionna M. Kasper
  • Valerie Reinke
  • LaDeana W. Hillier
  • Robert H. Waterston
  • First Published August 16, 2016

Caenorhabditis elegans" > The million mutation project: A new approach to genetics in Caenorhabditis elegans

  • Owen Thompson
  • Mark Edgley
  • Pnina Strasbourger
  • Stephane Flibotte
  • Brent Ewing
  • Ryan Adair Vinci Au Iasha Chaudhry Lisa Fernando Harald Hutter Armelle Kieffer Joanne Lau Norris Lee Angela Miller Greta Raymant Bin Shen Jay Shendure Jon Taylor
  • ... [+13 authors] ...,
  • Emily H. Turner
  • LaDeana W. Hillier
  • Donald G. Moerman
  • Robert H. Waterston
  • First Published June 25, 2013

Modeling kinetic rate variation in third generation DNA sequencing data to detect putative modifications to DNA bases

  • Eric E. Schadt
  • Onureena Banerjee
  • Gang Fang
  • Zhixing Feng
  • Wing H. Wong
  • Xuegong Zhang Andrey Kislyuk Tyson A. Clark Khai Luong Alona Keren-Paz Andrew Chess Vipin Kumar
  • ... [+7 authors] ...,
  • Alice Chen-Plotkin
  • Neal Sondheimer
  • Jonas Korlach
  • Andrew Kasarskis
  • First Published October 23, 2012
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