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Resource

Drosophila and C. elegans transcription factors reveal tissue-specific regulatory relationships" > Binding profiles for 961 Drosophila and C. elegans transcription factors reveal tissue-specific regulatory relationships

  • Michelle Kudron
  • Louis Gevirtzman
  • Alec Victorsen
  • Bridget C. Lear
  • Jiahao Gao
  • Jinrui Xu Swapna Samanta Emily Frink Adri Tran-Pearson Chau Huynh Dionne Vafeados Ann Hammonds William Fisher Martha Wall Greg Wesseling Vanessa Hernandez Zhichun Lin Mary Kasparian Kevin White Ravi Allada Mark Gerstein
  • ... [+16 authors] ...,
  • LaDeana Hillier
  • Susan E. Celniker
  • Valerie Reinke
  • Robert H. Waterston
  • First Published October 22, 2024
Resource

Interspecies regulatory landscapes and elements revealed by novel joint systematic integration of human and mouse blood cell epigenomes

  • Guanjue Xiang
  • Xi He
  • Belinda M. Giardine
  • Kathryn J. Isaac
  • Dylan J. Taylor
  • Rajiv C. McCoy Camden Jansen Cheryl A. Keller Alexander Q. Wixom April Cockburn Amber Miller Qian Qi Yanghua He Yichao Li Jens Lichtenberg Elisabeth F. Heuston Stacie M. Anderson Jing Luan Marit W. Vermunt Feng Yue Michael E.G. Sauria Michael C. Schatz James Taylor Berthold Göttgens Jim R. Hughes Douglas R. Higgs Mitchell J. Weiss Yong Cheng Gerd A. Blobel David M. Bodine
  • ... [+25 authors] ...,
  • Yu Zhang
  • Qunhua Li
  • Shaun Mahony
  • Ross C. Hardison
  • First Published July 1, 2024
Method

Domain-adaptive neural networks improve cross-species prediction of transcription factor binding

  • Kelly Cochran
  • Divyanshi Srivastava
  • Avanti Shrikumar
  • Akshay Balsubramani
  • Ross C. Hardison
  • Anshul Kundaje
  • Shaun Mahony
  • First Published January 18, 2022
Resource

Caenorhabditis elegans nematodes" > Comprehensive characterization of tissue-specific chromatin accessibility in L2 Caenorhabditis elegans nematodes

  • Timothy J. Durham
  • Riza M. Daza
  • Louis Gevirtzman
  • Darren A. Cusanovich
  • Olubusayo Bolonduro
  • William Stafford Noble
  • Jay Shendure
  • Robert H. Waterston
  • First Published April 22, 2021
Resource

An integrative view of the regulatory and transcriptional landscapes in mouse hematopoiesis

  • Guanjue Xiang
  • Cheryl A. Keller
  • Elisabeth Heuston
  • Belinda M. Giardine
  • Lin An
  • Alexander Q. Wixom Amber Miller April Cockburn Michael E.G. Sauria Kathryn Weaver Jens Lichtenberg Berthold Göttgens Qunhua Li David Bodine Shaun Mahony James Taylor Gerd A. Blobel Mitchell J. Weiss Yong Cheng Feng Yue
  • ... [+15 authors] ...,
  • Jim Hughes
  • Douglas R. Higgs
  • Yu Zhang
  • Ross C. Hardison
  • First Published March 4, 2020
Resource

C. elegans embryonic transcriptome with tissue, time, and alternative splicing resolution" > The C. elegans embryonic transcriptome with tissue, time, and alternative splicing resolution

  • Adam D. Warner
  • Louis Gevirtzman
  • LaDeana W. Hillier
  • Brent Ewing
  • Robert H. Waterston
  • First Published May 23, 2019
In memoriam

John Sulston (1942–2018)

  • Robert H. Waterston
  • First Published June 1, 2018
Corrigendum

Corrigendum: A comparative analysis of whole genome sequencing of esophageal adenocarcinoma pre- and post-chemotherapy

  • Ayesha Noorani
  • Jan Bornschein
  • Andy G. Lynch
  • Maria Secrier
  • Achilleas Achilleos
  • Matthew Eldridge Lawrence Bower Jamie M.J. Weaver Jason Crawte Chin-Ann Ong Nicholas Shannon Shona MacRae Nicola Grehan Barbara Nutzinger
  • ... [+9 authors] ...,
  • Maria O'Donovan
  • Richard Hardwick
  • Simon Tavaré
  • Rebecca C. Fitzgerald
  • First Published October 3, 2017
Method

HiCRep: assessing the reproducibility of Hi-C data using a stratum-adjusted correlation coefficient

  • Tao Yang
  • Feipeng Zhang
  • Galip Gürkan Yardımcı
  • Fan Song
  • Ross C. Hardison
  • William Stafford Noble
  • Feng Yue
  • Qunhua Li
  • First Published August 30, 2017
Research

A comparative analysis of whole genome sequencing of esophageal adenocarcinoma pre- and post-chemotherapy

  • Ayesha Noorani
  • Jan Bornschein
  • Andy G. Lynch
  • Maria Secrier
  • Achilleas Achilleos
  • Matthew Eldridge Lawrence Bower Jamie M.J. Weaver Jason Crawte Chin-Ann Ong Nicholas Shannon Shona MacRae Nicola Grehan Barbara Nutzinger Maria O'Donovan Richard Hardwick Simon Tavaré Rebecca C. Fitzgerald Rachael Fels Elliott Paul A.W. Edwards Xiaodun Li Hamza Chettouh Gianmarco Contini Eleanor Gregson Sebastian Zeki Laura Smith Zarah Abdullahi Rachel de la Rue Ahmad Miremadi Shalini Malhotra Mike L. Smith Jim Davies Charles Crichton Nick Carroll Peter Safranek Andrew Hindmarsh Vijayendran Sujendran Richard Turkington Stephen J. Hayes Yeng Ang Shaun R. Preston Sarah Oakes Izhar Bagwan Vicki Save Richard J.E. Skipworth Ted R. Hupp J. Robert O'Neill Olga Tucker Andrew Beggs Philippe Taniere Sonia Puig Timothy J. Underwood Fergus Noble Jack Owsley Hugh Barr Neil Shepherd Oliver Old Jesper Lagergren James Gossage Andrew Davies Fuju Chang Janine Zylstra Grant Sanders Richard Berrisford Catherine Harden David Bunting Mike Lewis Ed Cheong Bhaskar Kumar Simon L. Parsons John Saunders Irshad Soomro Philip Kaye Laurence Lovat Rehan Haidry Victor Eneh Laszlo Igali Ian M. Welch Michael Scott Shamila Sothi Sari Suortamo Suzy Lishman Anna Grabowska
  • ... [+78 authors] ...,
  • Christopher J. Peters
  • George B. Hanna
  • David Khoo
  • Duncan Beardsmore
  • First Published May 2, 2017
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