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Research

Neo-antigens predicted by tumor genome meta-analysis correlate with increased patient survival

  • Scott D. Brown
  • Rene L. Warren
  • Ewan A. Gibb
  • Spencer D. Martin
  • John J. Spinelli
  • Brad H. Nelson
  • Robert A. Holt
  • First Published April 29, 2014
Research

Fusobacterium nucleatum infection is prevalent in human colorectal carcinoma" > Fusobacterium nucleatum infection is prevalent in human colorectal carcinoma

  • Mauro Castellarin
  • René L. Warren
  • J. Douglas Freeman
  • Lisa Dreolini
  • Martin Krzywinski
  • Jaclyn Strauss Rebecca Barnes
  • ... [+2 authors] ...,
  • Peter Watson
  • Emma Allen-Vercoe
  • Richard A. Moore
  • Robert A. Holt
  • First Published October 18, 2011
Resource

Exhaustive T-cell repertoire sequencing of human peripheral blood samples reveals signatures of antigen selection and a directly measured repertoire size of at least 1 million clonotypes

  • René L. Warren
  • J. Douglas Freeman
  • Thomas Zeng
  • Gina Choe
  • Sarah Munro
  • Richard Moore
  • John R. Webb
  • Robert A. Holt
  • First Published February 24, 2011
Resource

The completion of the Mammalian Gene Collection (MGC)

  • Gary Temple
  • Daniela S. Gerhard
  • Rebekah Rasooly
  • Elise A. Feingold
  • Peter J. Good
  • Cristen Robinson Allison Mandich Jeffrey G. Derge Jeanne Lewis Debonny Shoaf Francis S. Collins Wonhee Jang Lukas Wagner Carolyn M. Shenmen Leonie Misquitta Carl F. Schaefer Kenneth H. Buetow Tom I. Bonner Linda Yankie Ming Ward Lon Phan Alex Astashyn Garth Brown Catherine Farrell Jennifer Hart Melissa Landrum Bonnie L. Maidak Michael Murphy Terence Murphy Bhanu Rajput Lillian Riddick David Webb Janet Weber Wendy Wu Kim D. Pruitt Donna Maglott Adam Siepel Brona Brejova Mark Diekhans Rachel Harte Robert Baertsch Jim Kent David Haussler Michael Brent Laura Langton Charles L.G. Comstock Michael Stevens Chaochun Wei Marijke J. van Baren Kourosh Salehi-Ashtiani Ryan R. Murray Lila Ghamsari Elizabeth Mello Chenwei Lin Christa Pennacchio Kirsten Schreiber Nicole Shapiro Amber Marsh Elizabeth Pardes Troy Moore Anita Lebeau Mike Muratet Blake Simmons David Kloske Stephanie Sieja James Hudson Praveen Sethupathy Michael Brownstein Narayan Bhat Joseph Lazar Howard Jacob Chris E. Gruber Mark R. Smith John McPherson Angela M. Garcia Preethi H. Gunaratne Jiaqian Wu Donna Muzny Richard A. Gibbs Alice C. Young Gerard G. Bouffard Robert W. Blakesley Jim Mullikin Eric D. Green Mark C. Dickson Alex C. Rodriguez Jane Grimwood Jeremy Schmutz Richard M. Myers Martin Hirst Thomas Zeng Kane Tse Michelle Moksa Merinda Deng Kevin Ma Diana Mah Johnson Pang Greg Taylor Eric Chuah Athena Deng Keith Fichter Anne Go Stephanie Lee Jing Wang Malachi Griffith Ryan Morin Richard A. Moore Michael Mayo Sarah Munro Susan Wagner Steven J.M. Jones Robert A. Holt Marco A. Marra Sun Lu Shuwei Yang James Hartigan Marcus Graf Ralf Wagner Stanley Letovksy Jacqueline C. Pulido Keith Robison Dominic Esposito James Hartley
  • ... [+118 authors] ...,
  • Vanessa E. Wall
  • Ralph F. Hopkins
  • Osamu Ohara
  • Stefan Wiemann
  • First Published September 18, 2009
Methods

Profiling the T-cell receptor beta-chain repertoire by massively parallel sequencing

  • J. Douglas Freeman
  • René L. Warren
  • John R. Webb
  • Brad H. Nelson
  • Robert A. Holt
  • First Published June 18, 2009
LETTER

Escherichia coli" > Transcription of foreign DNA in Escherichia coli

  • René L. Warren
  • John D. Freeman
  • Roger C. Levesque
  • Duane E. Smailus
  • Stephane Flibotte
  • Robert A. Holt
  • First Published August 13, 2008
Next-Generation DNA Sequencing/Review

The new paradigm of flow cell sequencing

  • Robert A. Holt
  • Steven J.M. Jones
  • First Published June 2, 2008
RESOURCE

Xenopus laevis and Xenopus tropicalis reveals post-tetraploidization transcriptome remodeling" > Sequencing and analysis of 10,967 full-length cDNA clones from Xenopus laevis and Xenopus tropicalis reveals post-tetraploidization transcriptome remodeling

  • Ryan D. Morin
  • Elbert Chang
  • Anca Petrescu
  • Nancy Liao
  • Malachi Griffith
  • Robert Kirkpatrick Yaron S. Butterfield Alice C. Young Jeffrey Stott Sarah Barber Ryan Babakaiff Mark C. Dickson Corey Matsuo David Wong George S. Yang Duane E. Smailus Keith D. Wetherby Peggy N. Kwong Jane Grimwood Charles P. Brinkley Mabel Brown-John Natalie D. Reddix-Dugue Michael Mayo Jeremy Schmutz Jaclyn Beland Morgan Park Susan Gibson Teika Olson Gerard G. Bouffard Miranda Tsai Ruth Featherstone Steve Chand Asim S. Siddiqui Wonhee Jang Ed Lee Steven L. Klein Robert W. Blakesley Barry R. Zeeberg Sudarshan Narasimhan John N. Weinstein Christa Prange Pennacchio Richard M. Myers Eric D. Green Lukas Wagner
  • ... [+39 authors] ...,
  • Daniela S. Gerhard
  • Marco A. Marra
  • Steven J.M. Jones
  • Robert A. Holt
  • First Published May 3, 2006
LETTER

Identification by full-coverage array CGH of human DNA copy number increases relative to chimpanzee and gorilla

  • Gary M. Wilson
  • Stephane Flibotte
  • Perseus I. Missirlis
  • Marco A. Marra
  • Steven Jones
  • Kevin Thornton
  • Andrew G. Clark
  • Robert A. Holt
  • First Published December 19, 2005
Methods

Simple, robust methods for high-throughput nanoliter-scale DNA sequencing

  • Duane E. Smailus
  • Andre Marziali
  • Philip Dextras
  • Marco A. Marra
  • Robert A. Holt
  • First Published September 16, 2005
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