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Methods

Sequence and structural variation in a human genome uncovered by short-read, massively parallel ligation sequencing using two-base encoding

  • Kevin Judd McKernan
  • Heather E. Peckham
  • Gina L. Costa
  • Stephen F. McLaughlin
  • Yutao Fu
  • Eric F. Tsung Christopher R. Clouser Cisyla Duncan Jeffrey K. Ichikawa Clarence C. Lee Zheng Zhang Swati S. Ranade Eileen T. Dimalanta Fiona C. Hyland Tanya D. Sokolsky Lei Zhang Andrew Sheridan Haoning Fu Cynthia L. Hendrickson Bin Li Lev Kotler Jeremy R. Stuart Joel A. Malek Jonathan M. Manning Alena A. Antipova Damon S. Perez Michael P. Moore Kathleen C. Hayashibara Michael R. Lyons Robert E. Beaudoin Brittany E. Coleman Michael W. Laptewicz Adam E. Sannicandro Michael D. Rhodes Rajesh K. Gottimukkala Shan Yang Vineet Bafna Ali Bashir Andrew MacBride Can Alkan Jeffrey M. Kidd
  • ... [+36 authors] ...,
  • Evan E. Eichler
  • Martin G. Reese
  • Francisco M. De La Vega
  • Alan P. Blanchard
  • First Published June 22, 2009
LETTER

Comparative analysis of chicken chromosome 28 provides new clues to the evolutionary fragility of gene-rich vertebrate regions

  • Laurie Gordon
  • Shan Yang
  • Mary Tran-Gyamfi
  • Dan Baggott
  • Mari Christensen
  • Aaron Hamilton Richard Crooijmans
  • ... [+2 authors] ...,
  • Martien Groenen
  • Susan Lucas
  • Ivan Ovcharenko
  • Lisa Stubbs
  • First Published October 5, 2007
LETTER

C. elegans core neuronal protein–DNA interaction network" > Transcription factor modularity in a gene-centered C. elegans core neuronal protein–DNA interaction network

  • Vanessa Vermeirssen
  • M. Inmaculada Barrasa
  • César A. Hidalgo
  • Jenny Aurielle B. Babon
  • Reynaldo Sequerra
  • Lynn Doucette-Stamm
  • Albert-László Barabási
  • Albertha J.M. Walhout
  • First Published May 18, 2007
RESOURCE

A comprehensive catalog of human KRAB-associated zinc finger genes: Insights into the evolutionary history of a large family of transcriptional repressors

  • Stuart Huntley
  • Daniel M. Baggott
  • Aaron T. Hamilton
  • Mary Tran-Gyamfi
  • Shan Yang
  • Joomyeong Kim
  • Laurie Gordon
  • Elbert Branscomb
  • Lisa Stubbs
  • First Published April 10, 2006
RESOURCE

Caenorhabditis elegans Promoterome" > A First Version of the Caenorhabditis elegans Promoterome

  • Denis Dupuy
  • Qian-Ru Li
  • Bart Deplancke
  • Mike Boxem
  • Tong Hao
  • Philippe Lamesch Reynaldo Sequerra Stephanie Bosak Lynn Doucette-Stamm
  • ... [+4 authors] ...,
  • Ian A. Hope
  • David E. Hill
  • Albertha J.M. Walhout
  • Marc Vidal
  • First Published October 15, 2004
RESOURCE

Human ORFeome Version 1.1: A Platform for Reverse Proteomics

  • Jean-François Rual
  • Tomoko Hirozane-Kishikawa
  • Tong Hao
  • Nicolas Bertin
  • Siming Li
  • Amélie Dricot Ning Li Jennifer Rosenberg Philippe Lamesch Pierre-Olivier Vidalain Tracey R. Clingingsmith James L. Hartley Dominic Esposito David Cheo Troy Moore Blake Simmons Reynaldo Sequerra Stephanie Bosak Lynn Doucette-Stamm Christian Le Peuch Jean Vandenhaute
  • ... [+16 authors] ...,
  • Michael E. Cusick
  • Joanna S. Albala
  • David E. Hill
  • Marc Vidal
  • First Published October 15, 2004
RESOURCE

Brucella melitensis ORFeome Version 1.1" > Generation of the Brucella melitensis ORFeome Version 1.1

  • Amélie Dricot
  • Jean-François Rual
  • Philippe Lamesch
  • Nicolas Bertin
  • Denis Dupuy
  • Tong Hao Christophe Lambert Régis Hallez Jean-Marc Delroisse Jean Vandenhaute Ignacio Lopez-Goñi Ignacio Moriyon Juan M. Garcia-Lobo Félix J. Sangari Alastair P. MacMillan Sally J. Cutler Adrian M. Whatmore Stephanie Bozak Reynaldo Sequerra Lynn Doucette-Stamm
  • ... [+15 authors] ...,
  • Marc Vidal
  • David E. Hill
  • Jean-Jacques Letesson
  • Xavier De Bolle
  • First Published October 15, 2004
LETTER

C. elegans ORFeome Version 3.1: Increasing the Coverage of ORFeome Resources With Improved Gene Predictions" > C. elegans ORFeome Version 3.1: Increasing the Coverage of ORFeome Resources With Improved Gene Predictions

  • Philippe Lamesch
  • Stuart Milstein
  • Tong Hao
  • Jennifer Rosenberg
  • Ning Li
  • Reynaldo Sequerra Stephanie Bosak
  • ... [+2 authors] ...,
  • Lynn Doucette-Stamm
  • Jean Vandenhaute
  • David E. Hill
  • Marc Vidal
  • First Published October 15, 2004
LETTER

Insertions and Deletions Are Male Biased Too: A Whole-Genome Analysis in Rodents

  • Kateryna D. Makova
  • Shan Yang
  • Francesca Chiaromonte
  • First Published April 1, 2004
ARTICLE

Patterns of Insertions and Their Covariation With Substitutions in the Rat, Mouse, and Human Genomes

  • Shan Yang
  • Arian F. Smit
  • Scott Schwartz
  • Francesca Chiaromonte
  • Krishna M. Roskin
  • David Haussler
  • Webb Miller
  • Ross C. Hardison
  • First Published April 1, 2004
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