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Resource

Drosophila melanogaster" > Diverse patterns of genomic targeting by transcriptional regulators in Drosophila melanogaster

  • Matthew Slattery
  • Lijia Ma
  • Rebecca F. Spokony
  • Robert K. Arthur
  • Pouya Kheradpour
  • Anshul Kundaje Nicolas Nègre Alex Crofts Ryan Ptashkin Jennifer Zieba Alexander Ostapenko Sarah Suchy Alec Victorsen Nader Jameel A. Jason Grundstad Wenxuan Gao Jennifer R. Moran
  • ... [+12 authors] ...,
  • E. Jay Rehm
  • Robert L. Grossman
  • Manolis Kellis
  • Kevin P. White
  • First Published July 1, 2014
Research

Systematic dissection of regulatory motifs in 2000 predicted human enhancers using a massively parallel reporter assay

  • Pouya Kheradpour
  • Jason Ernst
  • Alexandre Melnikov
  • Peter Rogov
  • Li Wang
  • Xiaolan Zhang
  • Jessica Alston
  • Tarjei S. Mikkelsen
  • Manolis Kellis
  • First Published March 19, 2013
Resource

ChIP-seq guidelines and practices of the ENCODE and modENCODE consortia

  • Stephen G. Landt
  • Georgi K. Marinov
  • Anshul Kundaje
  • Pouya Kheradpour
  • Florencia Pauli
  • Serafim Batzoglou Bradley E. Bernstein Peter Bickel James B. Brown Philip Cayting Yiwen Chen Gilberto DeSalvo Charles Epstein Katherine I. Fisher-Aylor Ghia Euskirchen Mark Gerstein Jason Gertz Alexander J. Hartemink Michael M. Hoffman Vishwanath R. Iyer Youngsook L. Jung Subhradip Karmakar Manolis Kellis Peter V. Kharchenko Qunhua Li Tao Liu X. Shirley Liu Lijia Ma Aleksandar Milosavljevic Richard M. Myers Peter J. Park Michael J. Pazin Marc D. Perry Debasish Raha Timothy E. Reddy Joel Rozowsky Noam Shoresh Arend Sidow Matthew Slattery John A. Stamatoyannopoulos Michael Y. Tolstorukov Kevin P. White Simon Xi
  • ... [+38 authors] ...,
  • Peggy J. Farnham
  • Jason D. Lieb
  • Barbara J. Wold
  • Michael Snyder
  • First Published September 5, 2012
Method

Locating protein-coding sequences under selection for additional, overlapping functions in 29 mammalian genomes

  • Michael F. Lin
  • Pouya Kheradpour
  • Stefan Washietl
  • Brian J. Parker
  • Jakob S. Pedersen
  • Manolis Kellis
  • First Published October 12, 2011
Platypus Special/Letter

Conservation of small RNA pathways in platypus

  • Elizabeth P. Murchison
  • Pouya Kheradpour
  • Ravi Sachidanandam
  • Carly Smith
  • Emily Hodges
  • Zhenyu Xuan
  • ... [+1 authors] ...,
  • Manolis Kellis
  • Frank Grützner
  • Alexander Stark
  • Gregory J. Hannon
  • First Published May 7, 2008
12 Drosophila Genomes/Methods

Drosophila genomes" > Reliable prediction of regulator targets using 12 Drosophila genomes

  • Pouya Kheradpour
  • Alexander Stark
  • Sushmita Roy
  • Manolis Kellis
  • First Published November 7, 2007
12 Drosophila Genomes/Letter

Drosophila genomes" > Systematic discovery and characterization of fly microRNAs using 12 Drosophila genomes

  • Alexander Stark
  • Pouya Kheradpour
  • Leopold Parts
  • Julius Brennecke
  • Emily Hodges
  • Gregory J. Hannon
  • Manolis Kellis
  • First Published November 7, 2007
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