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Integrating short-read and long-read single-cell RNA sequencing for comprehensive transcriptome profiling in mouse retina

Meng Wang
Yumei Li
Jun Wang
Soo Hwan Oh
Yexuan Cao
Rui Chen

First Published March 6, 2025

A deconvolution framework that uses single-cell sequencing plus a small benchmark data set for accurate analysis of cell type ratios in complex tissue samples

Shuai Guo
Xiaoqian Liu
Xuesen Cheng
Yujie Jiang
Shuangxi Ji
Qingnan Liang Andrew Koval Yumei Li Leah A. Owen Ivana K. Kim Ana Aparicio Sanghoon Lee Anil K. Sood Scott Kopetz John Paul Shen
... [+10 authors] ...,
John N. Weinstein
Margaret M. DeAngelis
Rui Chen
Wenyi Wang

First Published November 25, 2024

Macaca mulatta) based on whole-genome sequences" > The population genomics of rhesus macaques (Macaca mulatta) based on whole-genome sequences

Cheng Xue
Muthuswamy Raveendran
R. Alan Harris
Gloria L. Fawcett
Xiaoming Liu
Simon White Mahmoud Dahdouli David Rio Deiros Jennifer E. Below William Salerno Laura Cox Guoping Fan Betsy Ferguson Julie Horvath Zach Johnson Sree Kanthaswamy H. Michael Kubisch Dahai Liu Michael Platt David G. Smith Binghua Sun Eric J. Vallender Feng Wang Roger W. Wiseman Rui Chen
... [+20 authors] ...,
Donna M. Muzny
Richard A. Gibbs
Fuli Yu
Jeffrey Rogers

First Published October 17, 2016

Integrative subcellular proteomic analysis allows accurate prediction of human disease-causing genes

Li Zhao
Yiyun Chen
Amol Onkar Bajaj
Aiden Eblimit
Mingchu Xu
Zachry T. Soens Feng Wang Zhongqi Ge Sung Yun Jung Feng He
... [+5 authors] ...,
Yumei Li
Theodore G. Wensel
Jun Qin
Rui Chen

First Published February 24, 2016

lacZ reporter gene expression atlas for 313 adult KOMP mutant mouse lines" > A lacZ reporter gene expression atlas for 313 adult KOMP mutant mouse lines

David B. West
Ravi K. Pasumarthi
Brian Baridon
Esi Djan
Amanda Trainor
Stephen M. Griffey Eric K. Engelhard
... [+2 authors] ...,
Jared Rapp
Bowen Li
Pieter J. de Jong
K.C. Kent Lloyd

First Published January 15, 2015

Drosophila melanogaster" > Large-scale identification of chemically induced mutations in Drosophila melanogaster

Nele A. Haelterman
Lichun Jiang
Yumei Li
Vafa Bayat
Hector Sandoval
Berrak Ugur Kai Li Tan Ke Zhang Danqing Bei Bo Xiong Wu-Lin Charng Theodore Busby Adeel Jawaid Gabriela David Manish Jaiswal
... [+10 authors] ...,
Koen J.T. Venken
Shinya Yamamoto
Rui Chen
Hugo J. Bellen

First Published September 25, 2014

A comprehensive molecular cytogenetic analysis of chromosome rearrangements in gibbons

Oronzo Capozzi
Lucia Carbone
Roscoe R. Stanyon
Annamaria Marra
Fengtang Yang
Christopher W. Whelan
Pieter J. de Jong
Mariano Rocchi
Nicoletta Archidiacono

First Published August 14, 2012

Nucleosome fragility reveals novel functional states of chromatin and poises genes for activation

Yuanxin Xi
Jianhui Yao
Rui Chen
Wei Li
Xiangwei He

First Published March 1, 2011

Clcn4-2 genomic structure differs between the X locus in Mus spretus and the autosomal locus in Mus musculus: AT motif enrichment on the X" > Clcn4-2 genomic structure differs between the X locus in Mus spretus and the autosomal locus in Mus musculus: AT motif enrichment on the X

Di Kim Nguyen
Fan Yang
Rajinder Kaul
Can Alkan
Anthony Antonellis
Karen F. Friery
Baoli Zhu
Pieter J. de Jong
Christine M. Disteche

First Published January 31, 2011

Drosophila melanogaster transcriptome by paired-end RNA sequencing" > The Drosophila melanogaster transcriptome by paired-end RNA sequencing

Bryce Daines
Hui Wang
Liguo Wang
Yumei Li
Yi Han
David Emmert William Gelbart
... [+2 authors] ...,
Xia Wang
Wei Li
Richard Gibbs
Rui Chen

First Published December 22, 2010

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