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Research

A dynamic and integrated epigenetic program at distal regions orchestrates transcriptional responses to VEGFA

Shiyan Wang
Jiahuan Chen
Sara P. Garcia
Xiaodong Liang
Fang Zhang
Pengyi Yan Huijing Yu Weiting Wei Zixuan Li Jingfang Wang Huangying Le Zeguang Han Xusheng Luo Daniel S. Day Sean M. Stevens Yan Zhang Peter J. Park Zhi-jie Liu
... [+13 authors] ...,
Kun Sun
Guo-cheng Yuan
William T. Pu
Bing Zhang

First Published January 22, 2019

Method

Linking transcriptional and genetic tumor heterogeneity through allele analysis of single-cell RNA-seq data

Jean Fan
Hae-Ock Lee
Soohyun Lee
Da-eun Ryu
Semin Lee
Catherine Xue Seok Jin Kim Kihyun Kim
... [+3 authors] ...,
Nikolaos Barkas
Peter J. Park
Woong-Yang Park
Peter V. Kharchenko

First Published June 13, 2018

Research

A dynamic H3K27ac signature identifies VEGFA-stimulated endothelial enhancers and requires EP300 activity

Bing Zhang
Daniel S. Day
Joshua W. Ho
Lingyun Song
Jingjing Cao
Danos Christodoulou
... [+1 authors] ...,
Jonathan G. Seidman
Gregory E. Crawford
Peter J. Park
William T. Pu

First Published April 1, 2013

Research

Functional genomic analysis of chromosomal aberrations in a compendium of 8000 cancer genomes

Tae-Min Kim
Ruibin Xi
Lovelace J. Luquette
Richard W. Park
Mark D. Johnson
Peter J. Park

First Published November 6, 2012

Resource

ChIP-seq guidelines and practices of the ENCODE and modENCODE consortia

Stephen G. Landt
Georgi K. Marinov
Anshul Kundaje
Pouya Kheradpour
Florencia Pauli
Serafim Batzoglou Bradley E. Bernstein Peter Bickel James B. Brown Philip Cayting Yiwen Chen Gilberto DeSalvo Charles Epstein Katherine I. Fisher-Aylor Ghia Euskirchen Mark Gerstein Jason Gertz Alexander J. Hartemink Michael M. Hoffman Vishwanath R. Iyer Youngsook L. Jung Subhradip Karmakar Manolis Kellis Peter V. Kharchenko Qunhua Li Tao Liu X. Shirley Liu Lijia Ma Aleksandar Milosavljevic Richard M. Myers Peter J. Park Michael J. Pazin Marc D. Perry Debasish Raha Timothy E. Reddy Joel Rozowsky Noam Shoresh Arend Sidow Matthew Slattery John A. Stamatoyannopoulos Michael Y. Tolstorukov Kevin P. White Simon Xi
... [+38 authors] ...,
Peggy J. Farnham
Jason D. Lieb
Barbara J. Wold
Michael Snyder

First Published September 5, 2012

Research

Drosophila genome" > Nature and function of insulator protein binding sites in the Drosophila genome

Yuri B. Schwartz
Daniela Linder-Basso
Peter V. Kharchenko
Michael Y. Tolstorukov
Maria Kim
Hua-Bing Li Andrey A. Gorchakov Aki Minoda Gregory Shanower Artyom A. Alekseyenko Nicole C. Riddle Youngsook L. Jung Tingting Gu Annette Plachetka Sarah C.R. Elgin Mitzi I. Kuroda
... [+11 authors] ...,
Peter J. Park
Mikhail Savitsky
Gary H. Karpen
Vincenzo Pirrotta

First Published July 5, 2012

Research

Drosophila heterochromatin" > Plasticity in patterns of histone modifications and chromosomal proteins in Drosophila heterochromatin

Nicole C. Riddle
Aki Minoda
Peter V. Kharchenko
Artyom A. Alekseyenko
Yuri B. Schwartz
Michael Y. Tolstorukov Andrey A. Gorchakov Jacob D. Jaffe Cameron Kennedy Daniela Linder-Basso Sally E. Peach Gregory Shanower Haiyan Zheng Mitzi I. Kuroda
... [+9 authors] ...,
Vincenzo Pirrotta
Peter J. Park
Sarah C.R. Elgin
Gary H. Karpen

First Published December 22, 2010

Letter

Comparative analysis of H2A.Z nucleosome organization in the human and yeast genomes

Michael Y. Tolstorukov
Peter V. Kharchenko
Joseph A. Goldman
Robert E. Kingston
Peter J. Park

First Published February 26, 2009

LETTER

HOX gene clusters" > Nucleosome positioning in human HOX gene clusters

Peter V. Kharchenko
Caroline J. Woo
Michael Y. Tolstorukov
Robert E. Kingston
Peter J. Park

First Published August 22, 2008