Research
3C sites in poly(A) RNA" > Nanopore direct RNA sequencing reveals METTL2A-mediated m3C sites in poly(A) RNA
- First Published October 30, 2025
Research
Positive selective sweeps of epigenetic mutations regulating specialized metabolites in plants
- First Published May 18, 2021
Research
Long-read sequencing for non-small-cell lung cancer genomes
- First Published September 4, 2020
Method
Metabolic labeling of RNA using multiple ribonucleoside analogs enables the simultaneous evaluation of RNA synthesis and degradation rates
- First Published August 25, 2020
Research
ZFX acts as a transcriptional activator in multiple types of human tumors by binding downstream from transcription start sites at the majority of CpG island promoters
- First Published February 2, 2018
Research
Long terminal repeats power evolution of genes and gene expression programs in mammalian oocytes and zygotes
- First Published May 18, 2017
Research
A GC-rich sequence feature in the 3′ UTR directs UPF1-dependent mRNA decay in mammalian cells
- First Published December 9, 2016
Resource
Ciona intestinalis" > Genome-wide identification and characterization of transcription start sites and promoters in the tunicate Ciona intestinalis
- First Published December 14, 2015
Research
Plasmodium falciparum" > Interactive transcriptome analysis of malaria patients and infecting Plasmodium falciparum
- First Published August 4, 2014
Resource
Coelacanth genomes reveal signatures for evolutionary transition from water to land
- First Published July 22, 2013
Method
Functional DNA methylation differences between tissues, cell types, and across individuals discovered using the M&M algorithm
- First Published June 26, 2013
Research
High-resolution DNA methylome analysis of primordial germ cells identifies gender-specific reprogramming in mice
- First Published February 14, 2013
Resource
ChIP-seq guidelines and practices of the ENCODE and modENCODE consortia
- First Published September 5, 2012
Research
Genome-wide genetic variations are highly correlated with proximal DNA methylation patterns
- First Published June 11, 2012
Resource
Genome-wide characterization of transcriptional start sites in humans by integrative transcriptome analysis
- First Published March 3, 2011
Research
Nucleotide composition-linked divergence of vertebrate core promoter architecture
- First Published January 10, 2011
LETTER
E2F in vivo binding specificity: Comparison of consensus versus nonconsensus binding sites
- First Published October 3, 2008
LETTER
Using ChIP-chip technology to reveal common principles of transcriptional repression in normal and cancer cells
- First Published March 17, 2008
LETTER
Systematic evaluation of variability in ChIP-chip experiments using predefined DNA targets
- First Published February 7, 2008
ARTICLE
A comprehensive ChIP–chip analysis of E2F1, E2F4, and E2F6 in normal and tumor cells reveals interchangeable roles of E2F family members
- First Published October 1, 2007
LETTER
Identification of an OCT4 and SRY regulatory module using integrated computational and experimental genomics approaches
- First Published June 13, 2007
LETTER
Distinct class of putative “non-conserved” promoters in humans: Comparative studies of alternative promoters of human and mouse genes
- First Published June 13, 2007
REVIEW
Locating mammalian transcription factor binding sites: A survey of computational and experimental techniques
- First Published October 19, 2006
LETTER
Toxoplasma gondii" > Common inheritance of chromosome Ia associated with clonal expansion of Toxoplasma gondii
- First Published August 10, 2006
LETTER
Suz12 binds to silenced regions of the genome in a cell-type-specific manner
- First Published June 2, 2006
LETTER
Unbiased location analysis of E2F1-binding sites suggests a widespread role for E2F1 in the human genome
- First Published April 10, 2006
LETTER
Diversification of transcriptional modulation: Large-scale identification and characterization of putative alternative promoters of human genes
- First Published December 12, 2005
LETTER
Analysis of Small Human Proteins Reveals the Translation of Upstream Open Reading Frames of mRNAs
- First Published October 15, 2004
LETTER
Sequence Comparison of Human and Mouse Genes Reveals a Homologous Block Structure in the Promoter Regions
- First Published September 1, 2004
RESOURCE
Fugu ESTs: New Resources for Transcription Analysis and Genome Annotation" > Fugu ESTs: New Resources for Transcription Analysis and Genome Annotation
- First Published January 1, 2003
REPORT
Identification and Characterization of the Potential Promoter Regions of 1031 Kinds of Human Genes
- First Published April 11, 2001
