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C. elegans balancer strains reveals previously unappreciated complex genomic rearrangements" > Genome sequencing of C. elegans balancer strains reveals previously unappreciated complex genomic rearrangements

Tatiana Maroilley
Stephane Flibotte
Francesca Jean
Victoria Rodrigues Alves Barbosa
Andrew Galbraith
Afiya Razia Chida Filip Cotra Xiao Li
... [+3 authors] ...,
Larisa Oncea
Mark Edgley
Don Moerman
Maja Tarailo-Graovac

First Published December 5, 2022

Research

ZFX acts as a transcriptional activator in multiple types of human tumors by binding downstream from transcription start sites at the majority of CpG island promoters

Suhn Kyong Rhie
Lijun Yao
Zhifei Luo
Heather Witt
Shannon Schreiner
Yu Guo
Andrew A. Perez
Peggy J. Farnham

First Published February 2, 2018

Resource

Burkholderia cenocepacia during long-term chronic infection of cystic fibrosis lungs" > Phenotypic diversity and genotypic flexibility of Burkholderia cenocepacia during long-term chronic infection of cystic fibrosis lungs

Amy Huei-Yi Lee
Stephane Flibotte
Sunita Sinha
Adrianna Paiero
Rachel L. Ehrlich
Sergey Balashov
... [+1 authors] ...,
Garth D. Ehrlich
James E.A. Zlosnik
Joshua Chang Mell
Corey Nislow

First Published March 21, 2017

Research

The role of DNA methylation in directing the functional organization of the cancer epigenome

Fides D. Lay
Yaping Liu
Theresa K. Kelly
Heather Witt
Peggy J. Farnham
Peter A. Jones
Benjamin P. Berman

First Published March 6, 2015

Method

Functional DNA methylation differences between tissues, cell types, and across individuals discovered using the M&M algorithm

Bo Zhang
Yan Zhou
Nan Lin
Rebecca F. Lowdon
Chibo Hong
Raman P. Nagarajan Jeffrey B. Cheng Daofeng Li Michael Stevens Hyung Joo Lee Xiaoyun Xing Jia Zhou Vasavi Sundaram GiNell Elliott Junchen Gu Taoping Shi Philippe Gascard Mahvash Sigaroudinia Thea D. Tlsty Theresa Kadlecek Arthur Weiss Henriette O’Geen Peggy J. Farnham Cécile L. Maire Keith L. Ligon Pamela A.F. Madden Angela Tam Richard Moore Martin Hirst
... [+24 authors] ...,
Marco A. Marra
Baoxue Zhang
Joseph F. Costello
Ting Wang

First Published June 26, 2013

Resource

Caenorhabditis elegans" > The million mutation project: A new approach to genetics in Caenorhabditis elegans

Owen Thompson
Mark Edgley
Pnina Strasbourger
Stephane Flibotte
Brent Ewing
Ryan Adair Vinci Au Iasha Chaudhry Lisa Fernando Harald Hutter Armelle Kieffer Joanne Lau Norris Lee Angela Miller Greta Raymant Bin Shen Jay Shendure Jon Taylor
... [+13 authors] ...,
Emily H. Turner
LaDeana W. Hillier
Donald G. Moerman
Robert H. Waterston

First Published June 25, 2013

Method

Spark: A navigational paradigm for genomic data exploration

Cydney B. Nielsen
Hamid Younesy
Henriette O'Geen
Xiaoqin Xu
Andrew R. Jackson
Aleksandar Milosavljevic Ting Wang
... [+2 authors] ...,
Joseph F. Costello
Martin Hirst
Peggy J. Farnham
Steven J.M. Jones

First Published September 7, 2012

Resource

ChIP-seq guidelines and practices of the ENCODE and modENCODE consortia

Stephen G. Landt
Georgi K. Marinov
Anshul Kundaje
Pouya Kheradpour
Florencia Pauli
Serafim Batzoglou Bradley E. Bernstein Peter Bickel James B. Brown Philip Cayting Yiwen Chen Gilberto DeSalvo Charles Epstein Katherine I. Fisher-Aylor Ghia Euskirchen Mark Gerstein Jason Gertz Alexander J. Hartemink Michael M. Hoffman Vishwanath R. Iyer Youngsook L. Jung Subhradip Karmakar Manolis Kellis Peter V. Kharchenko Qunhua Li Tao Liu X. Shirley Liu Lijia Ma Aleksandar Milosavljevic Richard M. Myers Peter J. Park Michael J. Pazin Marc D. Perry Debasish Raha Timothy E. Reddy Joel Rozowsky Noam Shoresh Arend Sidow Matthew Slattery John A. Stamatoyannopoulos Michael Y. Tolstorukov Kevin P. White Simon Xi
... [+38 authors] ...,
Peggy J. Farnham
Jason D. Lieb
Barbara J. Wold
Michael Snyder

First Published September 5, 2012

LETTER

E2F in vivo binding specificity: Comparison of consensus versus nonconsensus binding sites

Alina Rabinovich
Victor X. Jin
Roman Rabinovich
Xiaoqin Xu
Peggy J. Farnham

First Published October 3, 2008

LETTER

Escherichia coli" > Transcription of foreign DNA in Escherichia coli

René L. Warren
John D. Freeman
Roger C. Levesque
Duane E. Smailus
Stephane Flibotte
Robert A. Holt

First Published August 13, 2008

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Resource

C. elegans balancer strains reveals previously unappreciated complex genomic rearrangements" > Genome sequencing of C. elegans balancer strains reveals previously unappreciated complex genomic rearrangements

Research

ZFX acts as a transcriptional activator in multiple types of human tumors by binding downstream from transcription start sites at the majority of CpG island promoters

Resource

Burkholderia cenocepacia during long-term chronic infection of cystic fibrosis lungs" > Phenotypic diversity and genotypic flexibility of Burkholderia cenocepacia during long-term chronic infection of cystic fibrosis lungs

Research

The role of DNA methylation in directing the functional organization of the cancer epigenome

Method

Functional DNA methylation differences between tissues, cell types, and across individuals discovered using the M&M algorithm

Resource

Caenorhabditis elegans" > The million mutation project: A new approach to genetics in Caenorhabditis elegans

Method

Spark: A navigational paradigm for genomic data exploration

Resource

ChIP-seq guidelines and practices of the ENCODE and modENCODE consortia

LETTER

E2F in vivo binding specificity: Comparison of consensus versus nonconsensus binding sites

LETTER

Escherichia coli" > Transcription of foreign DNA in Escherichia coli

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