Search | Genome Research

Ostrinia furnacalis)" > Genome-wide profiles of H3K9me3, H3K27me3 modifications, and DNA methylation during diapause of Asian corn borer (Ostrinia furnacalis)

Pengfei Lv
Xingzhuo Yang
Xianguo Zhao
Zhangwu Zhao
Juan Du

First Published June 12, 2024

Analyzing rare mutations in metagenomes assembled using long and accurate reads

Marcus W. Fedarko
Mikhail Kolmogorov
Pavel A. Pevzner

First Published November 23, 2022

Fast and accurate mapping of long reads to complete genome assemblies with VerityMap

Andrey V. Bzikadze
Alla Mikheenko
Pavel A. Pevzner

First Published November 15, 2022

Automated annotation of human centromeres with HORmon

Olga Kunyavskaya
Tatiana Dvorkina
Andrey V. Bzikadze
Ivan A. Alexandrov
Pavel A. Pevzner

First Published May 11, 2022

Gene prediction in the immunoglobulin loci

Vikram Sirupurapu
Yana Safonova
Pavel A. Pevzner

First Published May 11, 2022

Variations in antibody repertoires correlate with vaccine responses

Yana Safonova
Sung Bong Shin
Luke Kramer
James Reecy
Corey T. Watson
Timothy P.L. Smith
Pavel A. Pevzner

First Published March 31, 2022

V(DD)J recombination is an important and evolutionarily conserved mechanism for generating antibodies with unusually long CDR3s

Yana Safonova
Pavel A. Pevzner

First Published September 18, 2020

BiosyntheticSPAdes: reconstructing biosynthetic gene clusters from assembly graphs

Dmitry Meleshko
Hosein Mohimani
Vittorio Tracanna
Iman Hajirasouliha
Marnix H. Medema
Anton Korobeynikov
Pavel A. Pevzner

First Published June 3, 2019

Plasmid detection and assembly in genomic and metagenomic data sets

Dmitry Antipov
Mikhail Raiko
Alla Lapidus
Pavel A. Pevzner

First Published May 2, 2019

Detection and analysis of ancient segmental duplications in mammalian genomes

Lianrong Pu
Yu Lin
Pavel A. Pevzner

First Published May 7, 2018

metaSPAdes: a new versatile metagenomic assembler

Sergey Nurk
Dmitry Meleshko
Anton Korobeynikov
Pavel A. Pevzner

First Published March 15, 2017

Porphyromonas gingivalis recovered from a biofilm in a hospital sink using a high-throughput single-cell genomics platform" > Genome of the pathogen Porphyromonas gingivalis recovered from a biofilm in a hospital sink using a high-throughput single-cell genomics platform

Jeffrey S. McLean
Mary-Jane Lombardo
Michael G. Ziegler
Mark Novotny
Joyclyn Yee-Greenbaum
Jonathan H. Badger Glenn Tesler Sergey Nurk Valery Lesin Daniel Brami Adam P. Hall Anna Edlund Lisa Z. Allen Scott Durkin Sharon Reed Francesca Torriani Kenneth H. Nealson
... [+12 authors] ...,
Pavel A. Pevzner
Robert Friedman
J. Craig Venter
Roger S. Lasken

First Published April 5, 2013

Breakpoint graphs and ancestral genome reconstructions

Max A. Alekseyev
Pavel A. Pevzner

First Published February 13, 2009

De novo fragment assembly with short mate-paired reads: Does the read length matter?

Mark J. Chaisson
Dumitru Brinza
Pavel A. Pevzner

First Published December 3, 2008

Comparative proteogenomics: Combining mass spectrometry and comparative genomics to analyze multiple genomes

Nitin Gupta
Jamal Benhamida
Vipul Bhargava
Daniel Goodman
Elisabeth Kain
Ian Kerman Ngan Nguyen Noah Ollikainen Jesse Rodriguez Jian Wang Mary S. Lipton
... [+6 authors] ...,
Margaret Romine
Vineet Bafna
Richard D. Smith
Pavel A. Pevzner

First Published April 21, 2008

Short read fragment assembly of bacterial genomes

Mark J. Chaisson
Pavel A. Pevzner

First Published December 14, 2007

Whole proteome analysis of post-translational modifications: Applications of mass-spectrometry for proteogenomic annotation

Nitin Gupta
Stephen Tanner
Navdeep Jaitly
Joshua N. Adkins
Mary Lipton
Robert Edwards Margaret Romine
... [+2 authors] ...,
Andrei Osterman
Vineet Bafna
Richard D. Smith
Pavel A. Pevzner

First Published August 9, 2007

The convergence of cytogenetics and rearrangement-based models for ancestral genome reconstruction

Guillaume Bourque
Glenn Tesler
Pavel A. Pevzner

First Published March 1, 2006

Comparative architectures of mammalian and chicken genomes reveal highly variable rates of genomic rearrangements across different lineages

Guillaume Bourque
Evgeny M. Zdobnov
Peer Bork
Pavel A. Pevzner
Glenn Tesler

First Published December 8, 2004

Alu repeat elements reveals complex evolutionary history" > Whole-genome analysis of Alu repeat elements reveals complex evolutionary history

Alkes L. Price
Eleazar Eskin
Pavel A. Pevzner

First Published November 1, 2004

Reconstructing the Genomic Architecture of Ancestral Mammals: Lessons From Human, Mouse, and Rat Genomes

Guillaume Bourque
Pavel A. Pevzner
Glenn Tesler

First Published April 1, 2004

Genome-Scale Evolution: Reconstructing Gene Orders in the Ancestral Species

Guillaume Bourque
Pavel A. Pevzner

First Published January 1, 2002

Assembling Puzzles from Preassembled Blocks

Pavel A. Pevzner

First Published September 1, 2001

Efficiency of Database Search for Identification of Mutated and Modified Proteins via Mass Spectrometry

Pavel A. Pevzner
Zufar Mulyukov
Vlado Dancik
Chris L Tang

First Published February 1, 2001

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Your search for returned 24 results

Ostrinia furnacalis)" > Genome-wide profiles of H3K9me3, H3K27me3 modifications, and DNA methylation during diapause of Asian corn borer (Ostrinia furnacalis)

Analyzing rare mutations in metagenomes assembled using long and accurate reads

Fast and accurate mapping of long reads to complete genome assemblies with VerityMap

Automated annotation of human centromeres with HORmon

Gene prediction in the immunoglobulin loci

Variations in antibody repertoires correlate with vaccine responses

V(DD)J recombination is an important and evolutionarily conserved mechanism for generating antibodies with unusually long CDR3s

BiosyntheticSPAdes: reconstructing biosynthetic gene clusters from assembly graphs

Plasmid detection and assembly in genomic and metagenomic data sets

Detection and analysis of ancient segmental duplications in mammalian genomes

metaSPAdes: a new versatile metagenomic assembler

Porphyromonas gingivalis recovered from a biofilm in a hospital sink using a high-throughput single-cell genomics platform" > Genome of the pathogen Porphyromonas gingivalis recovered from a biofilm in a hospital sink using a high-throughput single-cell genomics platform

Breakpoint graphs and ancestral genome reconstructions

De novo fragment assembly with short mate-paired reads: Does the read length matter?

Comparative proteogenomics: Combining mass spectrometry and comparative genomics to analyze multiple genomes

Short read fragment assembly of bacterial genomes

Whole proteome analysis of post-translational modifications: Applications of mass-spectrometry for proteogenomic annotation

The convergence of cytogenetics and rearrangement-based models for ancestral genome reconstruction

Comparative architectures of mammalian and chicken genomes reveal highly variable rates of genomic rearrangements across different lineages

Alu repeat elements reveals complex evolutionary history" > Whole-genome analysis of Alu repeat elements reveals complex evolutionary history

Reconstructing the Genomic Architecture of Ancestral Mammals: Lessons From Human, Mouse, and Rat Genomes

Genome-Scale Evolution: Reconstructing Gene Orders in the Ancestral Species

Assembling Puzzles from Preassembled Blocks

Efficiency of Database Search for Identification of Mutated and Modified Proteins via Mass Spectrometry

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Your search for returned 24 results