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Research

Highly complete long-read genomes reveal pangenomic variation underlying yeast phenotypic diversity

  • Cory A. Weller
  • Ilya Andreev
  • Michael J. Chambers
  • Morgan Park
  • Joshua S. Bloom
  • Meru J. Sadhu Beatrice B. Barnabas Sean Black Gerard G. Bouffard Shelise Y. Brooks Juyun Crawford Holly Marfani Lyudmila Dekhtyar Joel Han Shi-Ling Ho Richelle Legaspi Quino L. Maduro Catherine A. Masiello Jennifer C. McDowell Casandra Montemayor James C. Mullikin Morgan Park Nancy L. Riebow Karen Schandler Brian Schmidt Christina Sison Sirintorn Stantripop
  • ... [+22 authors] ...,
  • James W. Thomas
  • Pamela J. Thomas
  • Meghana Vemulapalli
  • Alice C. Young
  • First Published May 1, 2023
Research

Cell-type–specific eQTL of primary melanocytes facilitates identification of melanoma susceptibility genes

  • Tongwu Zhang
  • Jiyeon Choi
  • Michael A. Kovacs
  • Jianxin Shi
  • Mai Xu
  • Alisa M. Goldstein Adam J. Trower D. Timothy Bishop Mark M. Iles David L. Duffy Stuart MacGregor Laufey T. Amundadottir Matthew H. Law Stacie K. Loftus William J. Pavan Kevin M. Brown Matthew H. Law D. Timothy Bishop Jeffrey E. Lee Myriam Brossard Nicholas G. Martin Eric K. Moses Fengju Song Jennifer H. Barrett Rajiv Kumar Douglas F. Easton Paul D.P. Pharoah Anthony J. Swerdlow Katerina P. Kypreou John C. Taylor Mark Harland Juliette Randerson-Moor Lars A. Akslen Per A. Andresen Marie-Françoise Avril Esther Azizi Giovanna Bianchi Scarrà Kevin M. Brown Tadeusz Dȩbniak David L. Duffy David E. Elder Shenying Fang Eitan Friedman Pilar Galan Paola Ghiorzo Elizabeth M. Gillanders Alisa M. Goldstein Nelleke A. Gruis Johan Hansson Per Helsing Marko Hočevar Veronica Höiom Christian Ingvar Peter A. Kanetsky Wei V. Chen Maria Teresa Landi Julie Lang G. Mark Lathrop Jan Lubiński Rona M. Mackie Graham J. Mann Anders Molven Grant W. Montgomery Srdjan Novaković Håkan Olsson Susana Puig Joan Anton Puig-Butille Wenting Wu Abrar A. Qureshi Graham L. Radford-Smith Nienke van der Stoep Remco van Doorn David C. Whiteman Jamie E. Craig Dirk Schadendorf Lisa A. Simms Kathryn P. Burdon Dale R. Nyholt Karen A. Pooley Nick Orr Alexander J. Stratigos Anne E. Cust Sarah V. Ward Nicholas K. Hayward Jiali Han Hans-Joachim Schulze Alison M. Dunning Julia A. Newton Bishop Florence Demenais Christopher I. Amos Stuart MacGregor Mark M. Iles Beatrice B. Barnabas Gerard G. Bouffard Shelis Y. Brooks Holly Coleman Lyudmila Dekhtyar Xiaobin Guan Joel Han Shi-ling Ho Richelle Legaspi Quino L. Maduro Catherine A. Masiello Jennifer C. McDowell Casandra Montemayor James C. Mullikin Morgan Park Nancy L. Riebow Karen Schandler Brian Schmidt Christina Sison Raymond Smith Sirintorn Stantripop
  • ... [+108 authors] ...,
  • James W. Thomas
  • Pamela J. Thomas
  • Meghana Vemulapalli
  • Alice C. Young
  • First Published October 17, 2018
ARTICLE

Analyses of deep mammalian sequence alignments and constraint predictions for 1% of the human genome

  • Elliott H. Margulies
  • Gregory M. Cooper
  • George Asimenos
  • Daryl J. Thomas
  • Colin N. Dewey
  • Adam Siepel Ewan Birney Damian Keefe Ariel S. Schwartz Minmei Hou James Taylor Sergey Nikolaev Juan I. Montoya-Burgos Ari Löytynoja Simon Whelan Fabio Pardi Tim Massingham James B. Brown Peter Bickel Ian Holmes James C. Mullikin Abel Ureta-Vidal Benedict Paten Eric A. Stone Kate R. Rosenbloom W. James Kent Gerard G. Bouffard Xiaobin Guan Nancy F. Hansen Jacquelyn R. Idol Valerie V.B. Maduro Baishali Maskeri Jennifer C. McDowell Morgan Park Pamela J. Thomas Alice C. Young Robert W. Blakesley Donna M. Muzny Erica Sodergren David A. Wheeler Kim C. Worley Huaiyang Jiang George M. Weinstock Richard A. Gibbs Tina Graves Robert Fulton Elaine R. Mardis Richard K. Wilson Michele Clamp James Cuff Sante Gnerre David B. Jaffe Jean L. Chang Kerstin Lindblad-Toh Eric S. Lander Angie Hinrichs Heather Trumbower Hiram Clawson Ann Zweig Robert M. Kuhn Galt Barber Rachel Harte Donna Karolchik Matthew A. Field Richard A. Moore Carrie A. Matthewson Jacqueline E. Schein Marco A. Marra Stylianos E. Antonarakis Serafim Batzoglou Nick Goldman Ross Hardison David Haussler
  • ... [+68 authors] ...,
  • Webb Miller
  • Lior Pachter
  • Eric D. Green
  • Arend Sidow
  • First Published June 13, 2007
LETTER

An intermediate grade of finished genomic sequence suitable for comparative analyses

  • Robert W. Blakesley
  • Nancy F. Hansen
  • James C. Mullikin
  • Pamela J. Thomas
  • Jennifer C. McDowell
  • Baishali Maskeri Alice C. Young Beatrice Benjamin Shelise Y. Brooks Bradley I. Coleman Jyoti Gupta Shi-Ling Ho Eric M. Karlins Quino L. Maduro Sirintorn Stantripop Cyrus Tsurgeon Jennifer L. Vogt Michelle A. Walker
  • ... [+13 authors] ...,
  • Catherine A. Masiello
  • Xiaobin Guan
  • Gerard G. Bouffard
  • Eric D. Green
  • First Published October 12, 2004
LETTER

Pericentromeric Duplications in the Laboratory Mouse

  • James W. Thomas
  • Mary G. Schueler
  • Tyrone J. Summers
  • Robert W. Blakesley
  • Jennifer C. McDowell
  • Pamela J. Thomas Jacquelyn R. Idol Valerie V.B. Maduro Shih-Queen Lee-Lin Jeffrey W. Touchman
  • ... [+5 authors] ...,
  • Gerard G. Bouffard
  • Stephen M. Beckstrom-Sternberg
  • NISC Comparative Sequencing Program
  • Eric D. Green
  • First Published December 30, 2002
METHODS

Parallel Construction of Orthologous Sequence-Ready Clone Contig Maps in Multiple Species

  • James W. Thomas
  • Arjun B. Prasad
  • Tyrone J. Summers
  • Shih-Queen Lee-Lin
  • Valerie V.B. Maduro
  • Jacquelyn R. Idol
  • ... [+1 authors] ...,
  • Joseph F. Ryan
  • Pamela J. Thomas
  • Jennifer C. McDowell
  • Eric D. Green
  • First Published August 1, 2002
REPORT

3.3 Mb of Mouse Genomic Sequence Orthologous to the Region of Human Chromosome 7q11.23 Implicated in Williams Syndrome " > Generation and Comparative Analysis of ∼3.3 Mb of Mouse Genomic Sequence Orthologous to the Region of Human Chromosome 7q11.23 Implicated in Williams Syndrome

  • Udaya DeSilva
  • Laura Elnitski
  • Jacquelyn R. Idol
  • Johannah L. Doyle
  • Weiniu Gan
  • James W. Thomas Scott Schwartz Nicole L. Dietrich Stephen M. Beckstrom-Sternberg Jennifer C. McDowell Robert W. Blakesley Gerard G. Bouffard
  • ... [+7 authors] ...,
  • Pamela J. Thomas
  • Jeffrey W. Touchman
  • Webb Miller
  • Eric D. Green
  • First Published January 1, 2002
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