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3C sites in poly(A) RNA" > Nanopore direct RNA sequencing reveals METTL2A-mediated m³C sites in poly(A) RNA

Shuhei Mitsutomi
Anzu Sugawara
Masahide Seki
Yutaka Suzuki
Sotaro Miyao
Haozhe Du
... [+1 authors] ...,
Kenji Takahashi
Yusuke Mizukami
Kenzui Taniue
Nobuyoshi Akimitsu

First Published October 30, 2025

The role of insulators and transcription in 3D chromatin organization of flies

Keerthi T. Chathoth
Liudmila A. Mikheeva
Gilles Crevel
Jareth C. Wolfe
Ioni Hunter
Saskia Beckett-Doyle
... [+1 authors] ...,
Sue Cotterill
Hongsheng Dai
Andrew Harrison
Nicolae Radu Zabet

First Published March 30, 2022

Positive selective sweeps of epigenetic mutations regulating specialized metabolites in plants

Kazumasa Shirai
Mitsuhiko P. Sato
Ranko Nishi
Masahide Seki
Yutaka Suzuki
Kousuke Hanada

First Published May 18, 2021

Long-read sequencing for non-small-cell lung cancer genomes

Yoshitaka Sakamoto
Liu Xu
Masahide Seki
Toshiyuki T. Yokoyama
Masahiro Kasahara
Yukie Kashima Akihiro Ohashi Yoko Shimada Noriko Motoi Katsuya Tsuchihara Susumu S. Kobayashi
... [+6 authors] ...,
Takashi Kohno
Yuichi Shiraishi
Ayako Suzuki
Yutaka Suzuki

First Published September 4, 2020

Metabolic labeling of RNA using multiple ribonucleoside analogs enables the simultaneous evaluation of RNA synthesis and degradation rates

Kentaro Kawata
Hiroyasu Wakida
Toshimichi Yamada
Kenzui Taniue
Han Han
Masahide Seki
Yutaka Suzuki
Nobuyoshi Akimitsu

First Published August 25, 2020

Drosophila genome" > Chromatin architecture reorganization during neuronal cell differentiation in Drosophila genome

Keerthi T. Chathoth
Nicolae Radu Zabet

First Published February 1, 2019

Plasmodium falciparum" > Corrigendum: Interactive transcriptome analysis of malaria patients and infecting Plasmodium falciparum

Junya Yamagishi
Anna Natori
Mohammed E.M. Tolba
Arthur E. Mongan
Chihiro Sugimoto
Toshiaki Katayama Shuichi Kawashima Wojciech Makalowski
... [+3 authors] ...,
Ryuichiro Maeda
Yuki Eshita
Josef Tuda
Yutaka Suzuki

First Published August 1, 2018

Long terminal repeats power evolution of genes and gene expression programs in mammalian oocytes and zygotes

Vedran Franke
Sravya Ganesh
Rosa Karlic
Radek Malik
Josef Pasulka
Filip Horvat Maja Kuzman Helena Fulka Marketa Cernohorska Jana Urbanova Eliska Svobodova Jun Ma Yutaka Suzuki
... [+8 authors] ...,
Fugaku Aoki
Richard M. Schultz
Kristian Vlahovicek
Petr Svoboda

First Published May 18, 2017

A GC-rich sequence feature in the 3′ UTR directs UPF1-dependent mRNA decay in mammalian cells

Naoto Imamachi
Kazi Abdus Salam
Yutaka Suzuki
Nobuyoshi Akimitsu

First Published December 9, 2016

Ciona intestinalis" > Genome-wide identification and characterization of transcription start sites and promoters in the tunicate Ciona intestinalis

Rui Yokomori
Kotaro Shimai
Koki Nishitsuji
Yutaka Suzuki
Takehiro G. Kusakabe
Kenta Nakai

First Published December 14, 2015

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