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Research

Sequence features that drive human promoter function and tissue specificity

  • Jane M. Landolin
  • David S. Johnson
  • Nathan D. Trinklein
  • Shelly F. Aldred
  • Catherine Medina
  • Hennady Shulha
  • Zhiping Weng
  • Richard M. Myers
  • First Published May 25, 2010
LETTER

Systematic evaluation of variability in ChIP-chip experiments using predefined DNA targets

  • David S. Johnson
  • Wei Li
  • D. Benjamin Gordon
  • Arindam Bhattacharjee
  • Bo Curry
  • Jayati Ghosh Leonardo Brizuela Jason S. Carroll Myles Brown Paul Flicek Christoph M. Koch Ian Dunham Mark Bieda Xiaoqin Xu Peggy J. Farnham Philipp Kapranov David A. Nix Thomas R. Gingeras Xinmin Zhang Heather Holster Nan Jiang Roland D. Green Jun S. Song Scott A. McCuine Elizabeth Anton Loan Nguyen Nathan D. Trinklein Zhen Ye Keith Ching David Hawkins Bing Ren Peter C. Scacheri Joel Rozowsky Alexander Karpikov Ghia Euskirchen Sherman Weissman Mark Gerstein Michael Snyder Annie Yang Zarmik Moqtaderi Heather Hirsch Hennady P. Shulha Yutao Fu Zhiping Weng
  • ... [+39 authors] ...,
  • Kevin Struhl
  • Richard M. Myers
  • Jason D. Lieb
  • X. Shirley Liu
  • First Published February 7, 2008
ARTICLE

Integrated analysis of experimental data sets reveals many novel promoters in 1% of the human genome

  • Nathan D. Trinklein
  • Ulaş Karaöz
  • Jiaqian Wu
  • Anason Halees
  • Shelley Force Aldred
  • Patrick J. Collins Deyou Zheng Zhengdong D. Zhang
  • ... [+3 authors] ...,
  • Mark B. Gerstein
  • Michael Snyder
  • Richard M. Myers
  • Zhiping Weng
  • First Published June 13, 2007
LETTER

Transcription factor binding and modified histones in human bidirectional promoters

  • Jane M. Lin
  • Patrick J. Collins
  • Nathan D. Trinklein
  • Yutao Fu
  • Hualin Xi
  • Richard M. Myers
  • Zhiping Weng
  • First Published June 13, 2007
LETTER

Serum response factor binding sites differ in three human cell types

  • Sara J. Cooper
  • Nathan D. Trinklein
  • Loan Nguyen
  • Richard M. Myers
  • First Published January 2, 2007
ARTICLE

Comprehensive analysis of transcriptional promoter structure and function in 1% of the human genome

  • Sara J. Cooper
  • Nathan D. Trinklein
  • Elizabeth D. Anton
  • Loan Nguyen
  • Richard M. Myers
  • First Published December 12, 2005
Methods

Direct isolation and identification of promoters in the human genome

  • Tae Hoon Kim
  • Leah O. Barrera
  • Chunxu Qu
  • Sara Van Calcar
  • Nathan D. Trinklein
  • Sara J. Cooper Rosa M. Luna
  • ... [+2 authors] ...,
  • Christopher K. Glass
  • Michael G. Rosenfeld
  • Richard M. Myers
  • Bing Ren
  • First Published May 17, 2005
LETTER

An Abundance of Bidirectional Promoters in the Human Genome

  • Nathan D. Trinklein
  • Shelley Force Aldred
  • Sara J. Hartman
  • Diane I. Schroeder
  • Robert P. Otillar
  • Richard M. Myers
  • First Published January 5, 2004
METHODS

Identification and Functional Analysis of Human Transcriptional Promoters

  • Nathan D. Trinklein
  • Shelley J. Force Aldred
  • Alok J. Saldanha
  • Richard M. Myers
  • First Published February 1, 2003
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