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Research

Comprehensive functional annotation of ESR1-driven enhancers in breast cancer reveals hierarchical activity independent of genomic and epigenomic contexts

  • Yanis Zekri
  • Sebastian Gregoricchio
  • Elif Yapıcı
  • Chia-Chi Flora Huang
  • Tunç Morova
  • Umut Berkay Altıntaş
  • Gozde Korkmaz
  • Nathan A. Lack
  • Wilbert Zwart
  • First Published June 10, 2025
Research

Estrogen receptor 1 chromatin profiling in human breast tumors reveals high inter-patient heterogeneity with enrichment of risk SNPs and enhancer activity at most-conserved regions

  • Stacey E.P. Joosten
  • Sebastian Gregoricchio
  • Suzan Stelloo
  • Elif Yapıcı
  • Chia-Chi Flora Huang
  • Kerim Yavuz Maria Donaldson Collier Tunç Morova Umut Berkay Altintaş Yongsoo Kim Sander Canisius Cathy B. Moelans Paul J. van Diest Gozde Korkmaz
  • ... [+9 authors] ...,
  • Nathan A. Lack
  • Michiel Vermeulen
  • Sabine C. Linn
  • Wilbert Zwart
  • First Published May 6, 2024
Method

Analyzing rare mutations in metagenomes assembled using long and accurate reads

  • Marcus W. Fedarko
  • Mikhail Kolmogorov
  • Pavel A. Pevzner
  • First Published November 23, 2022
Method

Fast and accurate mapping of long reads to complete genome assemblies with VerityMap

  • Andrey V. Bzikadze
  • Alla Mikheenko
  • Pavel A. Pevzner
  • First Published November 15, 2022
Method

Automated annotation of human centromeres with HORmon

  • Olga Kunyavskaya
  • Tatiana Dvorkina
  • Andrey V. Bzikadze
  • Ivan A. Alexandrov
  • Pavel A. Pevzner
  • First Published May 11, 2022
Method

Gene prediction in the immunoglobulin loci

  • Vikram Sirupurapu
  • Yana Safonova
  • Pavel A. Pevzner
  • First Published May 11, 2022
Method

Variations in antibody repertoires correlate with vaccine responses

  • Yana Safonova
  • Sung Bong Shin
  • Luke Kramer
  • James Reecy
  • Corey T. Watson
  • Timothy P.L. Smith
  • Pavel A. Pevzner
  • First Published March 31, 2022
Research

V(DD)J recombination is an important and evolutionarily conserved mechanism for generating antibodies with unusually long CDR3s

  • Yana Safonova
  • Pavel A. Pevzner
  • First Published September 18, 2020
Method

BiosyntheticSPAdes: reconstructing biosynthetic gene clusters from assembly graphs

  • Dmitry Meleshko
  • Hosein Mohimani
  • Vittorio Tracanna
  • Iman Hajirasouliha
  • Marnix H. Medema
  • Anton Korobeynikov
  • Pavel A. Pevzner
  • First Published June 3, 2019
Method

Plasmid detection and assembly in genomic and metagenomic data sets

  • Dmitry Antipov
  • Mikhail Raiko
  • Alla Lapidus
  • Pavel A. Pevzner
  • First Published May 2, 2019
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