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Deep sequencing of short capped RNAs reveals novel families of noncoding RNAs

  • Michiel de Hoon
  • Alessandro Bonetti
  • Charles Plessy
  • Yoshinari Ando
  • Chung-Chau Hon
  • Yuri Ishizu Masayoshi Itoh Sachi Kato Dongyan Lin Sho Maekawa Mitsuyoshi Murata Hiromi Nishiyori Jay W. Shin Jens Stolte Ana Maria Suzuki Michihira Tagami Hazuki Takahashi Supat Thongjuea
  • ... [+13 authors] ...,
  • Alistair R.R. Forrest
  • Yoshihide Hayashizaki
  • Juha Kere
  • Piero Carninci
  • First Published August 12, 2022

A minimally destructive protocol for DNA extraction from ancient teeth

  • Éadaoin Harney
  • Olivia Cheronet
  • Daniel M. Fernandes
  • Kendra Sirak
  • Matthew Mah
  • Rebecca Bernardos Nicole Adamski Nasreen Broomandkhoshbacht Kimberly Callan Ann Marie Lawson Jonas Oppenheimer Kristin Stewardson Fatma Zalzala Alexandra Anders Francesca Candilio Mihai Constantinescu Alfredo Coppa Ion Ciobanu János Dani Zsolt Gallina Francesco Genchi Emese Gyöngyvér Nagy Tamás Hajdu Magdolna Hellebrandt Antónia Horváth Ágnes Király Krisztián Kiss Barbara Kolozsi Péter Kovács Kitti Köhler Michaela Lucci Ildikó Pap Sergiu Popovici Pál Raczky Angela Simalcsik Tamás Szeniczey Sergey Vasilyev
  • ... [+32 authors] ...,
  • Cristian Virag
  • Nadin Rohland
  • David Reich
  • Ron Pinhasi
  • First Published February 12, 2021

Comparative transcriptomics of primary cells in vertebrates

  • Tanvir Alam
  • Saumya Agrawal
  • Jessica Severin
  • Robert S. Young
  • Robin Andersson
  • Erik Arner Akira Hasegawa Marina Lizio Jordan A. Ramilowski Imad Abugessaisa Yuri Ishizu Shohei Noma Hiroshi Tarui Martin S. Taylor Timo Lassmann Masayoshi Itoh Takeya Kasukawa Hideya Kawaji Luigi Marchionni Guojun Sheng Alistair R.R. Forrest
  • ... [+16 authors] ...,
  • Levon M. Khachigian
  • Yoshihide Hayashizaki
  • Piero Carninci
  • Michiel J.L. de Hoon
  • First Published July 27, 2020

The frequent evolutionary birth and death of functional promoters in mouse and human

  • Robert S. Young
  • Yoshihide Hayashizaki
  • Robin Andersson
  • Albin Sandelin
  • Hideya Kawaji
  • Masayoshi Itoh Timo Lassmann
  • ... [+2 authors] ...,
  • Piero Carninci
  • Wendy A. Bickmore
  • Alistair R. Forrest
  • Martin S. Taylor
  • First Published July 30, 2015

Comparison of CAGE and RNA-seq transcriptome profiling using clonally amplified and single-molecule next-generation sequencing

  • Hideya Kawaji
  • Marina Lizio
  • Masayoshi Itoh
  • Mutsumi Kanamori-Katayama
  • Ai Kaiho
  • Hiromi Nishiyori-Sueki Jay W. Shin Miki Kojima-Ishiyama Mitsuoki Kawano Mitsuyoshi Murata Noriko Ninomiya-Fukuda Sachi Ishikawa-Kato Sayaka Nagao-Sato
  • ... [+8 authors] ...,
  • Shohei Noma
  • Yoshihide Hayashizaki
  • Alistair R.R. Forrest
  • Piero Carninci
  • First Published March 27, 2014

Promoter architecture of mouse olfactory receptor genes

  • Charles Plessy
  • Giovanni Pascarella
  • Nicolas Bertin
  • Altuna Akalin
  • Claudia Carrieri
  • Anne Vassalli Dejan Lazarevic Jessica Severin Christina Vlachouli Roberto Simone Geoffrey J. Faulkner Jun Kawai Carsten O. Daub Silvia Zucchelli Yoshihide Hayashizaki
  • ... [+10 authors] ...,
  • Peter Mombaerts
  • Boris Lenhard
  • Stefano Gustincich
  • Piero Carninci
  • First Published December 22, 2011

Unamplified cap analysis of gene expression on a single-molecule sequencer

  • Mutsumi Kanamori-Katayama
  • Masayoshi Itoh
  • Hideya Kawaji
  • Timo Lassmann
  • Shintaro Katayama
  • Miki Kojima Nicolas Bertin Ai Kaiho Noriko Ninomiya
  • ... [+4 authors] ...,
  • Carsten O. Daub
  • Piero Carninci
  • Alistair R.R. Forrest
  • Yoshihide Hayashizaki
  • First Published May 19, 2011

A comprehensive survey of 3′ animal miRNA modification events and a possible role for 3′ adenylation in modulating miRNA targeting effectiveness

  • A. Maxwell Burroughs
  • Yoshinari Ando
  • Michiel J.L. de Hoon
  • Yasuhiro Tomaru
  • Takahiro Nishibu
  • Ryo Ukekawa Taku Funakoshi
  • ... [+2 authors] ...,
  • Tsutomu Kurokawa
  • Harukazu Suzuki
  • Yoshihide Hayashizaki
  • Carsten O. Daub
  • First Published August 18, 2010

Cross-mapping and the identification of editing sites in mature microRNAs in high-throughput sequencing libraries

  • Michiel J.L. de Hoon
  • Ryan J. Taft
  • Takehiro Hashimoto
  • Mutsumi Kanamori-Katayama
  • Hideya Kawaji
  • Mitsuoki Kawano Mami Kishima Timo Lassmann Geoffrey J. Faulkner John S. Mattick Carsten O. Daub
  • ... [+6 authors] ...,
  • Piero Carninci
  • Jun Kawai
  • Harukazu Suzuki
  • Yoshihide Hayashizaki
  • First Published January 5, 2010

Genome-wide detection and analysis of hippocampus core promoters using DeepCAGE

  • Eivind Valen
  • Giovanni Pascarella
  • Alistair Chalk
  • Norihiro Maeda
  • Miki Kojima
  • Chika Kawazu Mitsuyoshi Murata Hiromi Nishiyori Dejan Lazarevic Dario Motti Troels Torben Marstrand Man-Hung Eric Tang Xiaobei Zhao Anders Krogh Ole Winther Takahiro Arakawa Jun Kawai Christine Wells Carsten Daub Matthias Harbers
  • ... [+15 authors] ...,
  • Yoshihide Hayashizaki
  • Stefano Gustincich
  • Albin Sandelin
  • Piero Carninci
  • First Published December 11, 2008
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