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Resource

A pangenome framework uncovers the role of deletions in repeated evolution of cave-derived traits

  • Emma Y. Roback
  • Maggs X
  • Edward S. Ricemeyer
  • Adam Warlen
  • Rachel A. Carroll
  • Christine G. Elsik
  • ... [+1 authors] ...,
  • Alex C. Keene
  • Nicolas Rohner
  • Suzanne E. McGaugh
  • Wesley C. Warren
  • First Published August 13, 2026
Research

Xiphophorus species provide new insights into microevolution, hybrid incompatibility, and epistasis" > High resolution genomes of multiple Xiphophorus species provide new insights into microevolution, hybrid incompatibility, and epistasis

  • Yuan Lu
  • Edward Rice
  • Kang Du
  • Susanne Kneitz
  • Magali Naville
  • Corentin Dechaud Jean-Nicolas Volff Mikki Boswell William Boswell LaDeana Hillier Chad Tomlinson
  • ... [+6 authors] ...,
  • Kremitzki Milin
  • Ronald B. Walter
  • Manfred Schartl
  • Wesley C. Warren
  • First Published May 5, 2023
Resource

Precision environmental health monitoring by longitudinal exposome and multi-omics profiling

  • Peng Gao
  • Xiaotao Shen
  • Xinyue Zhang
  • Chao Jiang
  • Sai Zhang
  • Xin Zhou
  • Sophia Miryam Schüssler-Fiorenza Rose
  • Michael Snyder
  • First Published June 6, 2022
Research

Fixation of allelic gene expression landscapes and expression bias pattern shape the transcriptome of the clonal Amazon molly

  • Yuan Lu
  • David Bierbach
  • Jenny Ormanns
  • Wesley C. Warren
  • Ronald B. Walter
  • Manfred Schartl
  • First Published February 5, 2021
Research

Bos taurus reveals pervasiveness of X–Y arms races in mammalian lineages" > Sequence analysis in Bos taurus reveals pervasiveness of X–Y arms races in mammalian lineages

  • Jennifer F. Hughes
  • Helen Skaletsky
  • Tatyana Pyntikova
  • Natalia Koutseva
  • Terje Raudsepp
  • Laura G. Brown Daniel W. Bellott Ting-Jan Cho Shannon Dugan-Rocha Ziad Khan Colin Kremitzki Catrina Fronick Tina A. Graves-Lindsay Lucinda Fulton Wesley C. Warren Richard K. Wilson Elaine Owens James E. Womack William J. Murphy Donna M. Muzny
  • ... [+15 authors] ...,
  • Kim C. Worley
  • Bhanu P. Chowdhary
  • Richard A. Gibbs
  • David C. Page
  • First Published November 18, 2020
Research

Evolution of gene regulation in ruminants differs between evolutionary breakpoint regions and homologous synteny blocks

  • Marta Farré
  • Jaebum Kim
  • Anastasia A. Proskuryakova
  • Yang Zhang
  • Anastasia I. Kulemzina
  • Qiye Li Yang Zhou Yingqi Xiong Jennifer L. Johnson Polina L. Perelman Warren E. Johnson Wesley C. Warren Anna V. Kukekova Guojie Zhang Stephen J. O'Brien Oliver A. Ryder
  • ... [+11 authors] ...,
  • Alexander S. Graphodatsky
  • Jian Ma
  • Harris A. Lewin
  • Denis M. Larkin
  • First Published February 13, 2019
Method

Microfluidic isoform sequencing shows widespread splicing coordination in the human transcriptome

  • Hagen Tilgner
  • Fereshteh Jahanbani
  • Ishaan Gupta
  • Paul Collier
  • Eric Wei
  • Morten Rasmussen
  • Michael Snyder
  • First Published December 1, 2017
Research

Pangolin genomes and the evolution of mammalian scales and immunity

  • Siew Woh Choo
  • Mike Rayko
  • Tze King Tan
  • Ranjeev Hari
  • Aleksey Komissarov
  • Wei Yee Wee Andrey A. Yurchenko Sergey Kliver Gaik Tamazian Agostinho Antunes Richard K. Wilson Wesley C. Warren Klaus-Peter Koepfli Patrick Minx Ksenia Krasheninnikova Antoinette Kotze Desire L. Dalton Elaine Vermaak Ian C. Paterson Pavel Dobrynin Frankie Thomas Sitam Jeffrine J. Rovie-Ryan Warren E. Johnson Aini Mohamed Yusoff Shu-Jin Luo Kayal Vizi Karuppannan Gang Fang Deyou Zheng
  • ... [+23 authors] ...,
  • Mark B. Gerstein
  • Leonard Lipovich
  • Stephen J. O'Brien
  • Guat Jah Wong
  • First Published August 10, 2016
Method

INTEGRATE: gene fusion discovery using whole genome and transcriptome data

  • Jin Zhang
  • Nicole M. White
  • Heather K. Schmidt
  • Robert S. Fulton
  • Chad Tomlinson
  • Wesley C. Warren
  • Richard K. Wilson
  • Christopher A. Maher
  • First Published November 10, 2015
Resource

Single haplotype assembly of the human genome from a hydatidiform mole

  • Karyn Meltz Steinberg
  • Valerie A. Schneider
  • Tina A. Graves-Lindsay
  • Robert S. Fulton
  • Richa Agarwala
  • John Huddleston Sergey A. Shiryev Aleksandr Morgulis Urvashi Surti
  • ... [+4 authors] ...,
  • Wesley C. Warren
  • Deanna M. Church
  • Evan E. Eichler
  • Richard K. Wilson
  • First Published November 4, 2014
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