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A limited set of transcriptional programs define major cell types

  • First Published July 29, 2020

Dynamics of microRNA expression during mouse prenatal development

  • First Published October 23, 2019

De novo DNA demethylation and noncoding transcription define active intergenic regulatory elements

  • First Published June 28, 2013

Understanding transcriptional regulation by integrative analysis of transcription factor binding data

  • First Published September 5, 2012

The GENCODE v7 catalog of human long noncoding RNAs: Analysis of their gene structure, evolution, and expression

  • First Published September 5, 2012

Deep sequencing of subcellular RNA fractions shows splicing to be predominantly co-transcriptional in the human genome but inefficient for lncRNAs

  • First Published September 5, 2012

High-fidelity promoter profiling reveals widespread alternative promoter usage and transposon-driven developmental gene expression

  • First Published August 30, 2012

Systematic identification of long noncoding RNAs expressed during zebrafish embryogenesis

  • First Published November 22, 2011

Drosophila and other metazoa" > Evidence of abundant stop codon readthrough in Drosophila and other metazoa

  • First Published October 12, 2011

Locating protein-coding sequences under selection for additional, overlapping functions in 29 mammalian genomes

  • First Published October 12, 2011

Synthetic spike-in standards for RNA-seq experiments

  • First Published August 4, 2011

Drosophila cell lines" > The transcriptional diversity of 25 Drosophila cell lines

  • First Published December 22, 2010

The consensus coding sequence (CCDS) project: Identifying a common protein-coding gene set for the human and mouse genomes

  • First Published June 4, 2009

Systematic evaluation of variability in ChIP-chip experiments using predefined DNA targets

  • First Published February 7, 2008

Whole-genome maps of USF1 and USF2 binding and histone H3 acetylation reveal new aspects of promoter structure and candidate genes for common human disorders

  • First Published January 29, 2008

Drosophila melanogaster using 12 fly genomes" > Revisiting the protein-coding gene catalog of Drosophila melanogaster using 12 fly genomes

  • First Published November 7, 2007

The DART classification of unannotated transcription within the ENCODE regions: Associating transcription with known and novel loci

  • First Published June 13, 2007

Prominent use of distal 5′ transcription start sites and discovery of a large number of additional exons in ENCODE regions

  • First Published June 13, 2007

Pseudogenes in the ENCODE regions: Consensus annotation, analysis of transcription, and evolution

  • First Published June 13, 2007

Structured RNAs in the ENCODE selected regions of the human genome

  • First Published June 13, 2007

Origin of phenotypes: Genes and transcripts

  • First Published June 13, 2007

Examples of the complex architecture of the human transcriptome revealed by RACE and high-density tiling arrays

  • First Published July 5, 2005

Novel RNAs Identified From an In-Depth Analysis of the Transcriptome of Human Chromosomes 21 and 22

  • First Published March 1, 2004

Flexible Use of High-Density Oligonucleotide Arrays for Single-Nucleotide Polymorphism Discovery and Validation

  • First Published July 12, 2001

Mycobacterium tuberculosis " > Comparing Genomes within the Species Mycobacterium tuberculosis

  • First Published April 1, 2001

Detection of Deleted Genomic DNA Using a Semiautomated Computational Analysis of GeneChip Data

  • First Published November 21, 2000

Mycobacterium DNA Arrays" > Simultaneous Genotyping and Species Identification Using Hybridization Pattern Recognition Analysis of Generic Mycobacterium DNA Arrays

  • First Published May 1, 1998
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