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Research

Spatially resolved profiling of steroid nuclear receptors reveals a role for the disordered N-terminal domains in genome targeting and AP-1 interaction

  • Inbal Zigdon
  • Achinoam Shoham
  • Vladimir Mindel
  • Wajd Manadre
  • David Jan
  • Beniamin Krupkin
  • Dekel Yahav Har-Shai
  • Yaron Antebi
  • Naama Barkai
  • First Published June 22, 2026
Method

Deep sequencing of short capped RNAs reveals novel families of noncoding RNAs

  • Michiel de Hoon
  • Alessandro Bonetti
  • Charles Plessy
  • Yoshinari Ando
  • Chung-Chau Hon
  • Yuri Ishizu Masayoshi Itoh Sachi Kato Dongyan Lin Sho Maekawa Mitsuyoshi Murata Hiromi Nishiyori Jay W. Shin Jens Stolte Ana Maria Suzuki Michihira Tagami Hazuki Takahashi Supat Thongjuea
  • ... [+13 authors] ...,
  • Alistair R.R. Forrest
  • Yoshihide Hayashizaki
  • Juha Kere
  • Piero Carninci
  • First Published August 12, 2022
Research

Evolution of transcription factor binding through sequence variations and turnover of binding sites

  • Gat Krieger
  • Offir Lupo
  • Patricia Wittkopp
  • Naama Barkai
  • First Published May 26, 2022
Research

Rtt109 promotes nucleosome replacement ahead of the replication fork

  • Felix Jonas
  • Gilad Yaakov
  • Naama Barkai
  • First Published May 24, 2022
Research

Rtt109 slows replication speed by histone N-terminal acetylation

  • Nelly Frenkel
  • Felix Jonas
  • Miri Carmi
  • Gilad Yaakov
  • Naama Barkai
  • First Published February 9, 2021
Research

Comparative transcriptomics of primary cells in vertebrates

  • Tanvir Alam
  • Saumya Agrawal
  • Jessica Severin
  • Robert S. Young
  • Robin Andersson
  • Erik Arner Akira Hasegawa Marina Lizio Jordan A. Ramilowski Imad Abugessaisa Yuri Ishizu Shohei Noma Hiroshi Tarui Martin S. Taylor Timo Lassmann Masayoshi Itoh Takeya Kasukawa Hideya Kawaji Luigi Marchionni Guojun Sheng Alistair R.R. Forrest
  • ... [+16 authors] ...,
  • Levon M. Khachigian
  • Yoshihide Hayashizaki
  • Piero Carninci
  • Michiel J.L. de Hoon
  • First Published July 27, 2020
Research

Independent evolution of transcript abundance and gene regulatory dynamics

  • Gat Krieger
  • Offir Lupo
  • Avraham A. Levy
  • Naama Barkai
  • First Published July 22, 2020
Method

Chromosome assembly of large and complex genomes using multiple references

  • Mikhail Kolmogorov
  • Joel Armstrong
  • Brian J. Raney
  • Ian Streeter
  • Matthew Dunn
  • Fengtang Yang Duncan Odom Paul Flicek
  • ... [+3 authors] ...,
  • Thomas M. Keane
  • David Thybert
  • Benedict Paten
  • Son Pham
  • First Published October 19, 2018
Research

Repeat associated mechanisms of genome evolution and function revealed by the Mus caroli and Mus pahari genomes

  • David Thybert
  • Maša Roller
  • Fábio C.P. Navarro
  • Ian Fiddes
  • Ian Streeter
  • Christine Feig David Martin-Galvez Mikhail Kolmogorov Václav Janoušek Wasiu Akanni Bronwen Aken Sarah Aldridge Varshith Chakrapani William Chow Laura Clarke Carla Cummins Anthony Doran Matthew Dunn Leo Goodstadt Kerstin Howe Matthew Howell Ambre-Aurore Josselin Robert C. Karn Christina M. Laukaitis Lilue Jingtao Fergal Martin Matthieu Muffato Stefanie Nachtweide Michael A. Quail Cristina Sisu Mario Stanke Klara Stefflova Cock Van Oosterhout Frederic Veyrunes Ben Ward Fengtang Yang Golbahar Yazdanifar Amonida Zadissa David J. Adams Alvis Brazma Mark Gerstein Benedict Paten
  • ... [+37 authors] ...,
  • Son Pham
  • Thomas M. Keane
  • Duncan T. Odom
  • Paul Flicek
  • First Published March 21, 2018
Method

Model-based analysis of DNA replication profiles: predicting replication fork velocity and initiation rate by profiling free-cycling cells

  • Ariel Gispan
  • Miri Carmi
  • Naama Barkai
  • First Published December 27, 2016
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