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Your search for returned 33 results

Method

r-index-based pangenome indexing" > Accurate short-read alignment through r-index-based pangenome indexing

Rahul Varki
Massimiliano Rossi
Eddie Ferro
Marco Oliva
Erik Garrison
Ben Langmead
Christina Boucher

First Published June 12, 2025

Method

Efficient taxa identification using a pangenome index

Omar Ahmed
Massimiliano Rossi
Christina Boucher
Ben Langmead

First Published May 31, 2023

Resource

Precision environmental health monitoring by longitudinal exposome and multi-omics profiling

Peng Gao
Xiaotao Shen
Xinyue Zhang
Chao Jiang
Sai Zhang
Xin Zhou
Sophia Miryam Schüssler-Fiorenza Rose
Michael Snyder

First Published June 6, 2022

Method

Microfluidic isoform sequencing shows widespread splicing coordination in the human transcriptome

Hagen Tilgner
Fereshteh Jahanbani
Ishaan Gupta
Paul Collier
Eric Wei
Morten Rasmussen
Michael Snyder

First Published December 1, 2017

Research

PTCH1 as a major contributor to ocular developmental anomalies and extends the SOX2 regulatory network" > Targeted resequencing identifies PTCH1 as a major contributor to ocular developmental anomalies and extends the SOX2 regulatory network

Nicolas Chassaing
Erica E. Davis
Kelly L. McKnight
Adrienne R. Niederriter
Alexandre Causse
Véronique David Annaïck Desmaison Sophie Lamarre Catherine Vincent-Delorme Laurent Pasquier Christine Coubes Didier Lacombe Massimiliano Rossi Jean-Louis Dufier Helene Dollfus Josseline Kaplan
... [+11 authors] ...,
Nicholas Katsanis
Heather C. Etchevers
Stanislas Faguer
Patrick Calvas

First Published February 18, 2016

Resource

Annotation of functional variation in personal genomes using RegulomeDB

Alan P. Boyle
Eurie L. Hong
Manoj Hariharan
Yong Cheng
Marc A. Schaub
Maya Kasowski Konrad J. Karczewski Julie Park
... [+3 authors] ...,
Benjamin C. Hitz
Shuai Weng
J. Michael Cherry
Michael Snyder

First Published September 5, 2012

Resource

Sequence features and chromatin structure around the genomic regions bound by 119 human transcription factors

Jie Wang
Jiali Zhuang
Sowmya Iyer
XinYing Lin
Troy W. Whitfield
Melissa C. Greven Brian G. Pierce Xianjun Dong Anshul Kundaje Yong Cheng Oliver J. Rando Ewan Birney
... [+7 authors] ...,
Richard M. Myers
William S. Noble
Michael Snyder
Zhiping Weng

First Published September 5, 2012

Method

Ubiquitous heterogeneity and asymmetry of the chromatin environment at regulatory elements

Anshul Kundaje
Sofia Kyriazopoulou-Panagiotopoulou
Max Libbrecht
Cheryl L. Smith
Debasish Raha
Elliott E. Winters
... [+1 authors] ...,
Steven M. Johnson
Michael Snyder
Serafim Batzoglou
Arend Sidow

First Published September 5, 2012

Research

A highly integrated and complex PPARGC1A transcription factor binding network in HepG2 cells

Alexandra E. Charos
Brian D. Reed
Debasish Raha
Anna M. Szekely
Sherman M. Weissman
Michael Snyder

First Published September 5, 2012

Research

Understanding transcriptional regulation by integrative analysis of transcription factor binding data

Chao Cheng
Roger Alexander
Renqiang Min
Jing Leng
Kevin Y. Yip
Joel Rozowsky Koon-Kiu Yan Xianjun Dong Sarah Djebali Yijun Ruan Carrie A. Davis Piero Carninci Timo Lassman Thomas R. Gingeras Roderic Guigó
... [+10 authors] ...,
Ewan Birney
Zhiping Weng
Michael Snyder
Mark Gerstein

First Published September 5, 2012

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