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Research

Epigenetic characterization of pseudogenes across human tissues

  • Yunzhe Jiang
  • Beatrice Borsari
  • Mark Gerstein
  • First Published April 15, 2026
Resource

A map of enhancer regions in primary human neural progenitor cells using capture STARR-seq

  • Sophia C. Gaynor-Gillett
  • Lijun Cheng
  • Manman Shi
  • Jason Liu
  • Gaoyuan Wang
  • Megan Spector Qiuyu Guo Le Qi Mary Flaherty Martha Wall Ahyeon Hwang Mengting Gu Zhanlin Chen Yuhang Chen Jennifer R. Moran Jing Zhang
  • ... [+11 authors] ...,
  • Donghoon Lee
  • Mark Gerstein
  • Daniel Geschwind
  • Kevin P. White
  • First Published July 11, 2025
Resource

High-quality sika deer omics data and integrative analysis reveal genic and cellular regulation of antler regeneration

  • Zihe Li
  • Ziyu Xu
  • Lei Zhu
  • Tao Qin
  • Jinrui Ma
  • Zhanying Feng Huishan Yue Qing Guan Botong Zhou Ge Han Guokun Zhang Chunyi Li Shuaijun Jia
  • ... [+8 authors] ...,
  • Qiang Qiu
  • Dingjun Hao
  • Yong Wang
  • Wen Wang
  • First Published November 14, 2024
Resource

Drosophila and C. elegans transcription factors reveal tissue-specific regulatory relationships" > Binding profiles for 961 Drosophila and C. elegans transcription factors reveal tissue-specific regulatory relationships

  • Michelle Kudron
  • Louis Gevirtzman
  • Alec Victorsen
  • Bridget C. Lear
  • Jiahao Gao
  • Jinrui Xu Swapna Samanta Emily Frink Adri Tran-Pearson Chau Huynh Dionne Vafeados Ann Hammonds William Fisher Martha Wall Greg Wesseling Vanessa Hernandez Zhichun Lin Mary Kasparian Kevin White Ravi Allada Mark Gerstein
  • ... [+16 authors] ...,
  • LaDeana Hillier
  • Susan E. Celniker
  • Valerie Reinke
  • Robert H. Waterston
  • First Published October 22, 2024
Method

Antibody-free profiling of transcription factor occupancy during early embryogenesis by FitCUT&RUN

  • Xiangxiu Wang
  • Wen Wang
  • Yiman Wang
  • Jia Chen
  • Guifen Liu
  • Yong Zhang
  • First Published December 29, 2021
Research

Ligand-induced native G-quadruplex stabilization impairs transcription initiation

  • Conghui Li
  • Honghong Wang
  • Zhinang Yin
  • Pingping Fang
  • Ruijing Xiao
  • Ying Xiang Wen Wang
  • ... [+2 authors] ...,
  • Qiuzi Li
  • Beili Huang
  • Jian Huang
  • Kaiwei Liang
  • First Published August 16, 2021
Corrigendum

Corrigendum: Inherited DNA methylation primes the establishment of accessible chromatin during genome activation

  • Guifen Liu
  • Wen Wang
  • Shengen Hu
  • Xiangxiu Wang
  • Yong Zhang
  • First Published March 1, 2019
Research

Inherited DNA methylation primes the establishment of accessible chromatin during genome activation

  • Guifen Liu
  • Wen Wang
  • Shengen Hu
  • Xiangxiu Wang
  • Yong Zhang
  • First Published May 29, 2018
Research

Mus caroli and Mus pahari genomes" > Repeat associated mechanisms of genome evolution and function revealed by the Mus caroli and Mus pahari genomes

  • David Thybert
  • Maša Roller
  • Fábio C.P. Navarro
  • Ian Fiddes
  • Ian Streeter
  • Christine Feig David Martin-Galvez Mikhail Kolmogorov Václav Janoušek Wasiu Akanni Bronwen Aken Sarah Aldridge Varshith Chakrapani William Chow Laura Clarke Carla Cummins Anthony Doran Matthew Dunn Leo Goodstadt Kerstin Howe Matthew Howell Ambre-Aurore Josselin Robert C. Karn Christina M. Laukaitis Lilue Jingtao Fergal Martin Matthieu Muffato Stefanie Nachtweide Michael A. Quail Cristina Sisu Mario Stanke Klara Stefflova Cock Van Oosterhout Frederic Veyrunes Ben Ward Fengtang Yang Golbahar Yazdanifar Amonida Zadissa David J. Adams Alvis Brazma Mark Gerstein Benedict Paten
  • ... [+37 authors] ...,
  • Son Pham
  • Thomas M. Keane
  • Duncan T. Odom
  • Paul Flicek
  • First Published March 21, 2018
Research

One thousand somatic SNVs per skin fibroblast cell set baseline of mosaic mutational load with patterns that suggest proliferative origin

  • Alexej Abyzov
  • Livia Tomasini
  • Bo Zhou
  • Nikolaos Vasmatzis
  • Gianfilippo Coppola
  • Mariangela Amenduni Reenal Pattni Michael Wilson
  • ... [+3 authors] ...,
  • Mark Gerstein
  • Sherman Weissman
  • Alexander E. Urban
  • Flora M. Vaccarino
  • First Published February 24, 2017
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