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Research

Epigenetic characterization of pseudogenes across human tissues

  • Yunzhe Jiang
  • Beatrice Borsari
  • Mark Gerstein
  • First Published April 15, 2026
Resource

A map of enhancer regions in primary human neural progenitor cells using capture STARR-seq

  • Sophia C. Gaynor-Gillett
  • Lijun Cheng
  • Manman Shi
  • Jason Liu
  • Gaoyuan Wang
  • Megan Spector Qiuyu Guo Le Qi Mary Flaherty Martha Wall Ahyeon Hwang Mengting Gu Zhanlin Chen Yuhang Chen Jennifer R. Moran Jing Zhang
  • ... [+11 authors] ...,
  • Donghoon Lee
  • Mark Gerstein
  • Daniel Geschwind
  • Kevin P. White
  • First Published July 11, 2025
Resource

Drosophila and C. elegans transcription factors reveal tissue-specific regulatory relationships" > Binding profiles for 961 Drosophila and C. elegans transcription factors reveal tissue-specific regulatory relationships

  • Michelle Kudron
  • Louis Gevirtzman
  • Alec Victorsen
  • Bridget C. Lear
  • Jiahao Gao
  • Jinrui Xu Swapna Samanta Emily Frink Adri Tran-Pearson Chau Huynh Dionne Vafeados Ann Hammonds William Fisher Martha Wall Greg Wesseling Vanessa Hernandez Zhichun Lin Mary Kasparian Kevin White Ravi Allada Mark Gerstein
  • ... [+16 authors] ...,
  • LaDeana Hillier
  • Susan E. Celniker
  • Valerie Reinke
  • Robert H. Waterston
  • First Published October 22, 2024
Research

Switching roles for DNA and histone methylation depend on evolutionary ages of human endogenous retroviruses

  • Hitoshi Ohtani
  • Minmin Liu
  • Wanding Zhou
  • Gangning Liang
  • Peter A. Jones
  • First Published July 3, 2018
Research

Mus caroli and Mus pahari genomes" > Repeat associated mechanisms of genome evolution and function revealed by the Mus caroli and Mus pahari genomes

  • David Thybert
  • Maša Roller
  • Fábio C.P. Navarro
  • Ian Fiddes
  • Ian Streeter
  • Christine Feig David Martin-Galvez Mikhail Kolmogorov Václav Janoušek Wasiu Akanni Bronwen Aken Sarah Aldridge Varshith Chakrapani William Chow Laura Clarke Carla Cummins Anthony Doran Matthew Dunn Leo Goodstadt Kerstin Howe Matthew Howell Ambre-Aurore Josselin Robert C. Karn Christina M. Laukaitis Lilue Jingtao Fergal Martin Matthieu Muffato Stefanie Nachtweide Michael A. Quail Cristina Sisu Mario Stanke Klara Stefflova Cock Van Oosterhout Frederic Veyrunes Ben Ward Fengtang Yang Golbahar Yazdanifar Amonida Zadissa David J. Adams Alvis Brazma Mark Gerstein Benedict Paten
  • ... [+37 authors] ...,
  • Son Pham
  • Thomas M. Keane
  • Duncan T. Odom
  • Paul Flicek
  • First Published March 21, 2018
Research

The role of DNA methylation in directing the functional organization of the cancer epigenome

  • Fides D. Lay
  • Yaping Liu
  • Theresa K. Kelly
  • Heather Witt
  • Peggy J. Farnham
  • Peter A. Jones
  • Benjamin P. Berman
  • First Published March 6, 2015
Research

Reconfiguration of nucleosome-depleted regions at distal regulatory elements accompanies DNA methylation of enhancers and insulators in cancer

  • Phillippa C. Taberlay
  • Aaron L. Statham
  • Theresa K. Kelly
  • Susan J. Clark
  • Peter A. Jones
  • First Published June 10, 2014
Research

Reprogramming of the human intestinal epigenome by surgical tissue transposition

  • Fides D. Lay
  • Timothy J. Triche
  • Yvonne C. Tsai
  • Sheng-Fang Su
  • Sue Ellen Martin
  • Siamak Daneshmand
  • ... [+1 authors] ...,
  • Eila C. Skinner
  • Gangning Liang
  • Yoshitomo Chihara
  • Peter A. Jones
  • First Published February 10, 2014
Method

Genome-wide nucleosome map and cytosine methylation levels of an ancient human genome

  • Jakob Skou Pedersen
  • Eivind Valen
  • Amhed M. Vargas Velazquez
  • Brian J. Parker
  • Morten Rasmussen
  • Stinus Lindgreen Berit Lilje Desmond J. Tobin Theresa K. Kelly Søren Vang Robin Andersson Peter A. Jones Cindi A. Hoover Alexei Tikhonov Egor Prokhortchouk Edward M. Rubin Albin Sandelin
  • ... [+12 authors] ...,
  • M. Thomas P. Gilbert
  • Anders Krogh
  • Eske Willerslev
  • Ludovic Orlando
  • First Published December 3, 2013
Research

Analysis of variable retroduplications in human populations suggests coupling of retrotransposition to cell division

  • Alexej Abyzov
  • Rebecca Iskow
  • Omer Gokcumen
  • David W. Radke
  • Suganthi Balasubramanian
  • Baikang Pei
  • Lukas Habegger
  • Charles Lee
  • Mark Gerstein
  • First Published September 11, 2013
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