Filter results by:
Author
Publication date
Article type

Filter by Article type

Your search for returned 34 results

Save search
Order by:
Show per page
Review

Hash functions in nucleotide sequence analysis

  • Ke Chen
  • Xiang Li
  • Qian Shi
  • Mingfu Shao
  • Paul Medvedev
  • First Published May 4, 2026
Research

Epigenetic characterization of pseudogenes across human tissues

  • Yunzhe Jiang
  • Beatrice Borsari
  • Mark Gerstein
  • First Published April 15, 2026
Resource

Drosophila and C. elegans transcription factors reveal tissue-specific regulatory relationships" > Binding profiles for 961 Drosophila and C. elegans transcription factors reveal tissue-specific regulatory relationships

  • Michelle Kudron
  • Louis Gevirtzman
  • Alec Victorsen
  • Bridget C. Lear
  • Jiahao Gao
  • Jinrui Xu Swapna Samanta Emily Frink Adri Tran-Pearson Chau Huynh Dionne Vafeados Ann Hammonds William Fisher Martha Wall Greg Wesseling Vanessa Hernandez Zhichun Lin Mary Kasparian Kevin White Ravi Allada Mark Gerstein
  • ... [+16 authors] ...,
  • LaDeana Hillier
  • Susan E. Celniker
  • Valerie Reinke
  • Robert H. Waterston
  • First Published October 22, 2024
Method

Efficient mapping of accurate long reads in minimizer space with mapquik

  • Bariş Ekim
  • Kristoffer Sahlin
  • Paul Medvedev
  • Bonnie Berger
  • Rayan Chikhi
  • First Published June 30, 2023
RECOMB 2022 Special/Methods

Assembler artifacts include misassembly because of unsafe unitigs and underassembly because of bidirected graphs

  • Amatur Rahman
  • Paul Medvedev
  • First Published July 27, 2022
Review

k-mers for querying large collections of sequencing data sets" > Data structures based on k-mers for querying large collections of sequencing data sets

  • Camille Marchet
  • Christina Boucher
  • Simon J. Puglisi
  • Paul Medvedev
  • Mikaël Salson
  • Rayan Chikhi
  • First Published December 16, 2020
Research

Mus caroli and Mus pahari genomes" > Repeat associated mechanisms of genome evolution and function revealed by the Mus caroli and Mus pahari genomes

  • David Thybert
  • Maša Roller
  • Fábio C.P. Navarro
  • Ian Fiddes
  • Ian Streeter
  • Christine Feig David Martin-Galvez Mikhail Kolmogorov Václav Janoušek Wasiu Akanni Bronwen Aken Sarah Aldridge Varshith Chakrapani William Chow Laura Clarke Carla Cummins Anthony Doran Matthew Dunn Leo Goodstadt Kerstin Howe Matthew Howell Ambre-Aurore Josselin Robert C. Karn Christina M. Laukaitis Lilue Jingtao Fergal Martin Matthieu Muffato Stefanie Nachtweide Michael A. Quail Cristina Sisu Mario Stanke Klara Stefflova Cock Van Oosterhout Frederic Veyrunes Ben Ward Fengtang Yang Golbahar Yazdanifar Amonida Zadissa David J. Adams Alvis Brazma Mark Gerstein Benedict Paten
  • ... [+37 authors] ...,
  • Son Pham
  • Thomas M. Keane
  • Duncan T. Odom
  • Paul Flicek
  • First Published March 21, 2018
Method

A time- and cost-effective strategy to sequence mammalian Y Chromosomes: an application to the de novo assembly of gorilla Y

  • Marta Tomaszkiewicz
  • Samarth Rangavittal
  • Monika Cechova
  • Rebeca Campos Sanchez
  • Howard W. Fescemyer
  • Robert Harris Danling Ye Patricia C.M. O'Brien Rayan Chikhi
  • ... [+4 authors] ...,
  • Oliver A. Ryder
  • Malcolm A. Ferguson-Smith
  • Paul Medvedev
  • Kateryna D. Makova
  • First Published March 2, 2016
Method

Accurate typing of short tandem repeats from genome-wide sequencing data and its applications

  • Arkarachai Fungtammasan
  • Guruprasad Ananda
  • Suzanne E. Hile
  • Marcia Shu-Wei Su
  • Chen Sun
  • Robert Harris
  • Paul Medvedev
  • Kristin Eckert
  • Kateryna D. Makova
  • First Published March 30, 2015
Research

Analysis of variable retroduplications in human populations suggests coupling of retrotransposition to cell division

  • Alexej Abyzov
  • Rebecca Iskow
  • Omer Gokcumen
  • David W. Radke
  • Suganthi Balasubramanian
  • Baikang Pei
  • Lukas Habegger
  • Charles Lee
  • Mark Gerstein
  • First Published September 11, 2013
Show per page