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LETTER

Systematic evaluation of variability in ChIP-chip experiments using predefined DNA targets

  • David S. Johnson
  • Wei Li
  • D. Benjamin Gordon
  • Arindam Bhattacharjee
  • Bo Curry
  • Jayati Ghosh Leonardo Brizuela Jason S. Carroll Myles Brown Paul Flicek Christoph M. Koch Ian Dunham Mark Bieda Xiaoqin Xu Peggy J. Farnham Philipp Kapranov David A. Nix Thomas R. Gingeras Xinmin Zhang Heather Holster Nan Jiang Roland D. Green Jun S. Song Scott A. McCuine Elizabeth Anton Loan Nguyen Nathan D. Trinklein Zhen Ye Keith Ching David Hawkins Bing Ren Peter C. Scacheri Joel Rozowsky Alexander Karpikov Ghia Euskirchen Sherman Weissman Mark Gerstein Michael Snyder Annie Yang Zarmik Moqtaderi Heather Hirsch Hennady P. Shulha Yutao Fu Zhiping Weng
  • ... [+39 authors] ...,
  • Kevin Struhl
  • Richard M. Myers
  • Jason D. Lieb
  • X. Shirley Liu
  • First Published February 7, 2008
ARTICLE

A comprehensive ChIP–chip analysis of E2F1, E2F4, and E2F6 in normal and tumor cells reveals interchangeable roles of E2F family members

  • Xiaoqin Xu
  • Mark Bieda
  • Victor X. Jin
  • Alina Rabinovich
  • Mathew J. Oberley
  • Roland Green
  • Peggy J. Farnham
  • First Published October 1, 2007
LETTER

Unbiased location analysis of E2F1-binding sites suggests a widespread role for E2F1 in the human genome

  • Mark Bieda
  • Xiaoqin Xu
  • Michael A. Singer
  • Roland Green
  • Peggy J. Farnham
  • First Published April 10, 2006
ARTICLE

Methods for precise sizing, automated binning of alleles, and reduction of error rates in large-scale genotyping using fluorescently labeled dinucleotide markers. FUSION (Finland-U.S. Investigation of NIDDM Genetics) Study Group.

  • S Ghosh
  • Z E Karanjawala
  • E R Hauser
  • D Ally
  • J I Knapp
  • J B Rayman A Musick J Tannenbaum C Te S Shapiro W Eldridge T Musick C Martin J R Smith J D Carpten M J Brownstein J I Powell R Whiten P Chines
  • ... [+14 authors] ...,
  • S J Nylund
  • V L Magnuson
  • M Boehnke
  • F S Collins
  • First Published February 1, 1997
ARTICLE

Approach to genotyping errors caused by nontemplated nucleotide addition by Taq DNA polymerase.

  • J R Smith
  • J D Carpten
  • M J Brownstein
  • S Ghosh
  • V L Magnuson
  • D A Gilbert
  • J M Trent
  • F S Collins
  • First Published October 1, 1995
ARTICLE

Use of stock solutions to simplify mRNA quantitation by reverse transcription--PCR assays.

  • D Chen
  • V L Magnuson
  • B Steffensen
  • R J Klebe
  • First Published May 1, 1993
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