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Resource

An integrative TAD catalog in lymphoblastoid cell lines discloses the functional impact of deletions and insertions in human genomes

  • Chong Li
  • Marc Jan Bonder
  • Sabriya Syed
  • Matthew Jensen
  • Mark B. Gerstein
  • Michael C. Zody Mark J.P. Chaisson Michael E. Talkowski Tobias Marschall
  • ... [+4 authors] ...,
  • Jan O. Korbel
  • Evan E. Eichler
  • Charles Lee
  • Xinghua Shi
  • First Published December 5, 2024
Method

Assessing and mitigating privacy risks of sparse, noisy genotypes by local alignment to haplotype databases

  • Prashant S. Emani
  • Maya N. Geradi
  • Gamze Gürsoy
  • Monica R. Grasty
  • Andrew Miranker
  • Mark B. Gerstein
  • First Published December 14, 2023
Research

Dynamic RNA–protein interactions underlie the zebrafish maternal-to-zygotic transition

  • Vladimir Despic
  • Mario Dejung
  • Mengting Gu
  • Jayanth Krishnan
  • Jing Zhang
  • Lydia Herzel
  • ... [+1 authors] ...,
  • Korinna Straube
  • Mark B. Gerstein
  • Falk Butter
  • Karla M. Neugebauer
  • First Published April 5, 2017
Research

Pangolin genomes and the evolution of mammalian scales and immunity

  • Siew Woh Choo
  • Mike Rayko
  • Tze King Tan
  • Ranjeev Hari
  • Aleksey Komissarov
  • Wei Yee Wee Andrey A. Yurchenko Sergey Kliver Gaik Tamazian Agostinho Antunes Richard K. Wilson Wesley C. Warren Klaus-Peter Koepfli Patrick Minx Ksenia Krasheninnikova Antoinette Kotze Desire L. Dalton Elaine Vermaak Ian C. Paterson Pavel Dobrynin Frankie Thomas Sitam Jeffrine J. Rovie-Ryan Warren E. Johnson Aini Mohamed Yusoff Shu-Jin Luo Kayal Vizi Karuppannan Gang Fang Deyou Zheng
  • ... [+23 authors] ...,
  • Mark B. Gerstein
  • Leonard Lipovich
  • Stephen J. O'Brien
  • Guat Jah Wong
  • First Published August 10, 2016
Erratum

Burkholderia pseudomallei sequencing identifies genomic clades with distinct recombination, accessory, and epigenetic profiles" > Burkholderia pseudomallei sequencing identifies genomic clades with distinct recombination, accessory, and epigenetic profiles

  • Tannistha Nandi
  • Matthew T.G. Holden
  • Xavier Didelot
  • Kurosh Mehershahi
  • Justin A. Boddey
  • Ifor Beacham Ian Peak John Harting Primo Baybayan Yan Guo Susana Wang Lee Chee How Bernice Sim Angela Essex-Lopresti Mitali Sarkar-Tyson Michelle Nelson Sophie Smither Catherine Ong Lay Tin Aw Chua Hui Hoon Stephen Michell David J. Studholme
  • ... [+17 authors] ...,
  • Richard Titball
  • Swaine L. Chen
  • Julian Parkhill
  • Patrick Tan
  • First Published April 1, 2015
Research

Burkholderia pseudomallei sequencing identifies genomic clades with distinct recombination, accessory, and epigenetic profiles" > Burkholderia pseudomallei sequencing identifies genomic clades with distinct recombination, accessory, and epigenetic profiles

  • Tannistha Nandi
  • Matthew T.G. Holden
  • Xavier Didelot
  • Kurosh Mehershahi
  • Justin A. Boddey
  • Ifor Beacham Ian Peak John Harting Primo Baybayan Yan Guo Susana Wang Lee Chee How Bernice Sim Angela Essex-Lopresti Mitali Sarkar-Tyson Michelle Nelson Sophie Smither Catherine Ong Lay Tin Aw Chua Hui Hoon Stephen Michell David J. Studholme
  • ... [+17 authors] ...,
  • Richard Titball
  • Swaine L. Chen
  • Julian Parkhill
  • Patrick Tan
  • First Published September 18, 2014
Research

Bacillus cereus sensu lato species: Backdrop to the evolution of Bacillus anthracis" > Genomic characterization of the Bacillus cereus sensu lato species: Backdrop to the evolution of Bacillus anthracis

  • Michael E. Zwick
  • Sandeep J. Joseph
  • Xavier Didelot
  • Peter E. Chen
  • Kimberly A. Bishop-Lilly
  • Andrew C. Stewart Kristin Willner Nichole Nolan Shannon Lentz Maureen K. Thomason
  • ... [+5 authors] ...,
  • Shanmuga Sozhamannan
  • Alfred J. Mateczun
  • Lei Du
  • Timothy D. Read
  • First Published May 29, 2012
Research

Chromatin state signatures associated with tissue-specific gene expression and enhancer activity in the embryonic limb

  • Justin Cotney
  • Jing Leng
  • Sunghee Oh
  • Laura E. DeMare
  • Steven K. Reilly
  • Mark B. Gerstein
  • James P. Noonan
  • First Published March 15, 2012
Research

Mycobacterium tuberculosis complex by mutation, recombination, and natural selection" > After the bottleneck: Genome-wide diversification of the Mycobacterium tuberculosis complex by mutation, recombination, and natural selection

  • Amine Namouchi
  • Xavier Didelot
  • Ulrike Schöck
  • Brigitte Gicquel
  • Eduardo P.C. Rocha
  • First Published February 29, 2012
Method

C. elegans by integrating conservation, secondary structure, and high-throughput sequencing and array data" > Prediction and characterization of noncoding RNAs in C. elegans by integrating conservation, secondary structure, and high-throughput sequencing and array data

  • Zhi John Lu
  • Kevin Y. Yip
  • Guilin Wang
  • Chong Shou
  • LaDeana W. Hillier
  • Ekta Khurana Ashish Agarwal Raymond Auerbach Joel Rozowsky Chao Cheng Masaomi Kato David M. Miller Frank Slack
  • ... [+8 authors] ...,
  • Michael Snyder
  • Robert H. Waterston
  • Valerie Reinke
  • Mark B. Gerstein
  • First Published December 22, 2010
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